miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 5' -54.8 NC_003521.1 + 99167 0.68 0.938112
Target:  5'- gUCGAGCUCugcuucuccggccugGGGGcugaagguggcgGCGGaGGAUAcgGCGGg -3'
miRNA:   3'- aAGCUUGAG---------------CCCC------------UGCC-CCUAU--UGCC- -5'
14308 5' -54.8 NC_003521.1 + 98931 0.7 0.877877
Target:  5'- gUCGGAUcgCGGGaccgagcggaGACGGGuGGUGGCGGc -3'
miRNA:   3'- aAGCUUGa-GCCC----------CUGCCC-CUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 239450 0.7 0.884689
Target:  5'- -gCGGGCUCGGGGacaGCGGuGGcccGCGGc -3'
miRNA:   3'- aaGCUUGAGCCCC---UGCC-CCuauUGCC- -5'
14308 5' -54.8 NC_003521.1 + 217844 0.7 0.884689
Target:  5'- gUCGucuCUCGGGGGgGGGGGgggguuguuCGGu -3'
miRNA:   3'- aAGCuu-GAGCCCCUgCCCCUauu------GCC- -5'
14308 5' -54.8 NC_003521.1 + 152510 0.69 0.909809
Target:  5'- --aGGcCUCGGGGAUGGGGuccagGGCGc -3'
miRNA:   3'- aagCUuGAGCCCCUGCCCCua---UUGCc -5'
14308 5' -54.8 NC_003521.1 + 108111 0.69 0.915542
Target:  5'- --gGAACUUGGGcAUGGGGGcuACGGu -3'
miRNA:   3'- aagCUUGAGCCCcUGCCCCUauUGCC- -5'
14308 5' -54.8 NC_003521.1 + 35194 0.69 0.921052
Target:  5'- uUUCGGACcCaGGGACaGGGGGcgcGCGGg -3'
miRNA:   3'- -AAGCUUGaGcCCCUG-CCCCUau-UGCC- -5'
14308 5' -54.8 NC_003521.1 + 40889 0.69 0.924776
Target:  5'- --gGGAC-CGGGG-CGGGGGUcaguuuaauagcgaGGCGGg -3'
miRNA:   3'- aagCUUGaGCCCCuGCCCCUA--------------UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 228441 0.68 0.936239
Target:  5'- -aCGAACUCGGcgugaaagaGGcCGGaGGGUAGCGa -3'
miRNA:   3'- aaGCUUGAGCC---------CCuGCC-CCUAUUGCc -5'
14308 5' -54.8 NC_003521.1 + 238461 0.7 0.870859
Target:  5'- -gCGGcCUCGGcGGGCGGGGcgGagacGCGGc -3'
miRNA:   3'- aaGCUuGAGCC-CCUGCCCCuaU----UGCC- -5'
14308 5' -54.8 NC_003521.1 + 193298 0.71 0.856227
Target:  5'- gUCGGAgUCGGcG-CGGGGGUggUGGg -3'
miRNA:   3'- aAGCUUgAGCCcCuGCCCCUAuuGCC- -5'
14308 5' -54.8 NC_003521.1 + 115421 0.72 0.824732
Target:  5'- -cCGGACUCagcgccgcGGcGCGGGGGUGACGGu -3'
miRNA:   3'- aaGCUUGAGc-------CCcUGCCCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 212883 0.75 0.638035
Target:  5'- -gUGGACgCGGGcGACGGGGGUGuCGGu -3'
miRNA:   3'- aaGCUUGaGCCC-CUGCCCCUAUuGCC- -5'
14308 5' -54.8 NC_003521.1 + 18090 0.75 0.667701
Target:  5'- -aCGAcgGCcgCGGGGACGGaGGAggUAGCGGu -3'
miRNA:   3'- aaGCU--UGa-GCCCCUGCC-CCU--AUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 166775 0.74 0.706839
Target:  5'- -gUGAGCUCGGGacaGGCGGGGucgGACGa -3'
miRNA:   3'- aaGCUUGAGCCC---CUGCCCCua-UUGCc -5'
14308 5' -54.8 NC_003521.1 + 93485 0.73 0.745028
Target:  5'- -cUGAGCUcCGGGGuCGGGcgcgaGAUGGCGGa -3'
miRNA:   3'- aaGCUUGA-GCCCCuGCCC-----CUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 198296 0.73 0.76084
Target:  5'- aUCGGGgugacuggaguuccCUgGGGGugGGGGAUgGGCGGc -3'
miRNA:   3'- aAGCUU--------------GAgCCCCugCCCCUA-UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 103530 0.73 0.7636
Target:  5'- -gCGAACUCGcucauGGAggcgugcgUGGGGAUGACGGg -3'
miRNA:   3'- aaGCUUGAGCc----CCU--------GCCCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 92076 0.73 0.772726
Target:  5'- -gCGGAC-CGGGGGuCGGGGGgugcgcagGGCGGu -3'
miRNA:   3'- aaGCUUGaGCCCCU-GCCCCUa-------UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 98179 0.72 0.789735
Target:  5'- -aCGAACauccgaaUCGGGG-UGGGGAgGACGGc -3'
miRNA:   3'- aaGCUUG-------AGCCCCuGCCCCUaUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.