Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14308 | 5' | -54.8 | NC_003521.1 | + | 164205 | 0.68 | 0.949422 |
Target: 5'- --gGAACggCGGGGcgGCGGuGGUAGCGGc -3' miRNA: 3'- aagCUUGa-GCCCC--UGCCcCUAUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 120956 | 0.68 | 0.953379 |
Target: 5'- --gGGGCa-GGGGGCGGGGcgGuuuGCGGu -3' miRNA: 3'- aagCUUGagCCCCUGCCCCuaU---UGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 151392 | 0.68 | 0.957122 |
Target: 5'- -cCGuuCUgCGGGGACGGGuaggGACGGc -3' miRNA: 3'- aaGCuuGA-GCCCCUGCCCcua-UUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 148653 | 0.67 | 0.960654 |
Target: 5'- -cCGAGCUCGG---CGGGGAUGGCc- -3' miRNA: 3'- aaGCUUGAGCCccuGCCCCUAUUGcc -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 234826 | 0.67 | 0.96398 |
Target: 5'- -aCGAagACgacgaCGGGGACGGcGAUAGCGu -3' miRNA: 3'- aaGCU--UGa----GCCCCUGCCcCUAUUGCc -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 69732 | 0.67 | 0.96398 |
Target: 5'- -gCGGuaaCGGcGGGCGGGGAggcGGCGGu -3' miRNA: 3'- aaGCUugaGCC-CCUGCCCCUa--UUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 170520 | 0.67 | 0.967104 |
Target: 5'- -aUGAcgGCgugugaCGGGGACGGGGGgcagGAgGGu -3' miRNA: 3'- aaGCU--UGa-----GCCCCUGCCCCUa---UUgCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 53152 | 0.67 | 0.967104 |
Target: 5'- cUUGAACcacgUCGGGGACGGcggcgaGGAgguCGGc -3' miRNA: 3'- aAGCUUG----AGCCCCUGCC------CCUauuGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 113588 | 0.67 | 0.967104 |
Target: 5'- -cUGGGcCUCGGGGgcaACGGGGGcGGCGc -3' miRNA: 3'- aaGCUU-GAGCCCC---UGCCCCUaUUGCc -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 101843 | 0.67 | 0.970032 |
Target: 5'- -gCGGGCUCcGGGuuGuGGAUGGCGGa -3' miRNA: 3'- aaGCUUGAGcCCCugCcCCUAUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 132983 | 0.67 | 0.970032 |
Target: 5'- --gGGACgguaaCGGGGGacCGGGGuuggGACGGg -3' miRNA: 3'- aagCUUGa----GCCCCU--GCCCCua--UUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 19093 | 0.67 | 0.971149 |
Target: 5'- --gGAGgagGGGGACGGGGAgggagacgacgcgggUGGCGGg -3' miRNA: 3'- aagCUUgagCCCCUGCCCCU---------------AUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 37530 | 0.67 | 0.972768 |
Target: 5'- -aCGucCUgGGGGugggcaGCGGGGGUcGCGGc -3' miRNA: 3'- aaGCuuGAgCCCC------UGCCCCUAuUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 207662 | 0.66 | 0.977462 |
Target: 5'- aUCGGGa--GGGGGCaucgcgaGGGaGAUGACGGc -3' miRNA: 3'- aAGCUUgagCCCCUG-------CCC-CUAUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 187888 | 0.66 | 0.977691 |
Target: 5'- cUCGGGCggcaCGGGcGGCGGGGGca--GGu -3' miRNA: 3'- aAGCUUGa---GCCC-CUGCCCCUauugCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 123563 | 0.66 | 0.977691 |
Target: 5'- -cCGAcgaCGGcGGugGcGGGAUGGCGGc -3' miRNA: 3'- aaGCUugaGCC-CCugC-CCCUAUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 173652 | 0.66 | 0.977691 |
Target: 5'- gUUCGGGCggcugCGcGGGACccaGGGGu--ACGGa -3' miRNA: 3'- -AAGCUUGa----GC-CCCUG---CCCCuauUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 34064 | 0.66 | 0.979891 |
Target: 5'- cUUGAGCUCGGGGuugaccucguGCaGGGaGGUGugGu -3' miRNA: 3'- aAGCUUGAGCCCC----------UG-CCC-CUAUugCc -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 113362 | 0.66 | 0.979891 |
Target: 5'- -aCGGGC-CGGGGGCGaGGAgGAgGGu -3' miRNA: 3'- aaGCUUGaGCCCCUGCcCCUaUUgCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 217638 | 0.66 | 0.981729 |
Target: 5'- cUCGGcguGgUCGGGGGgcauggcgggaucCGGGGGUuuccACGGg -3' miRNA: 3'- aAGCU---UgAGCCCCU-------------GCCCCUAu---UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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