miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 3' -50.5 NC_003521.1 + 126624 0.66 0.999305
Target:  5'- uGUAGCGcUUGAUGUCgUCGUUgaUGCCc -3'
miRNA:   3'- -CAUUGC-AACUGCAGgGGCAAg-AUGGu -5'
14309 3' -50.5 NC_003521.1 + 150774 0.66 0.999276
Target:  5'- --cGCGUcGGCGUCCCgGagcuggaggccgUCUACCGc -3'
miRNA:   3'- cauUGCAaCUGCAGGGgCa-----------AGAUGGU- -5'
14309 3' -50.5 NC_003521.1 + 47999 0.67 0.997867
Target:  5'- cGUGACGUUGuuGgaaCCgCCGUUC-ACCGu -3'
miRNA:   3'- -CAUUGCAACugCa--GG-GGCAAGaUGGU- -5'
14309 3' -50.5 NC_003521.1 + 7096 0.67 0.997474
Target:  5'- -cGGCGgcGGCGUCCUCcUUCU-CCAg -3'
miRNA:   3'- caUUGCaaCUGCAGGGGcAAGAuGGU- -5'
14309 3' -50.5 NC_003521.1 + 113466 0.68 0.996505
Target:  5'- -aGACGUUGACGUUCUCGcagcUCUuucCCGg -3'
miRNA:   3'- caUUGCAACUGCAGGGGCa---AGAu--GGU- -5'
14309 3' -50.5 NC_003521.1 + 152082 0.69 0.989165
Target:  5'- --uGCGUgaUGGCGUCCUCGgUCU-CCAg -3'
miRNA:   3'- cauUGCA--ACUGCAGGGGCaAGAuGGU- -5'
14309 3' -50.5 NC_003521.1 + 167289 0.7 0.98615
Target:  5'- -gAGCG-UGAUGUUCUCGUUCU-CCAc -3'
miRNA:   3'- caUUGCaACUGCAGGGGCAAGAuGGU- -5'
14309 3' -50.5 NC_003521.1 + 170055 0.7 0.984419
Target:  5'- aUGAgGUUGGCGUUCCCGgucgcgUUCU-CCAg -3'
miRNA:   3'- cAUUgCAACUGCAGGGGC------AAGAuGGU- -5'
14309 3' -50.5 NC_003521.1 + 9965 0.74 0.901381
Target:  5'- ------aUGACGUCCCCG-UCUGCCc -3'
miRNA:   3'- cauugcaACUGCAGGGGCaAGAUGGu -5'
14309 3' -50.5 NC_003521.1 + 10649 1.09 0.016019
Target:  5'- cGUAACGUUGACGUCCCCGUUCUACCAc -3'
miRNA:   3'- -CAUUGCAACUGCAGGGGCAAGAUGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.