miRNA display CGI


Results 61 - 80 of 560 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 32133 0.66 0.992884
Target:  5'- --aGGUaGCGGGCGCggUGCaccaAgCGGCg -3'
miRNA:   3'- agaCCA-UGUUUGCGuuGCGg---UgGCCG- -5'
14309 5' -53 NC_003521.1 + 77695 0.66 0.994618
Target:  5'- gCUGGcgaagACAgccGugGCGGCGUUGuuGGCg -3'
miRNA:   3'- aGACCa----UGU---UugCGUUGCGGUggCCG- -5'
14309 5' -53 NC_003521.1 + 144953 0.66 0.99061
Target:  5'- gCUGGcucGCGAcgaagggcuGCGCGACauccugaGCCAgCGGCa -3'
miRNA:   3'- aGACCa--UGUU---------UGCGUUG-------CGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 74173 0.66 0.993799
Target:  5'- gCUGGccgACu-GCGCcGCGgCGCCcGGCg -3'
miRNA:   3'- aGACCa--UGuuUGCGuUGCgGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 54887 0.66 0.993799
Target:  5'- aUCUGGacacGCAGuggcuGCGCAcCGUuugcaggaucagCGCCGGCg -3'
miRNA:   3'- -AGACCa---UGUU-----UGCGUuGCG------------GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 59930 0.66 0.993799
Target:  5'- cCUGGUcuCcGACGUgGACGCCGaucaacagcCCGGCg -3'
miRNA:   3'- aGACCAu-GuUUGCG-UUGCGGU---------GGCCG- -5'
14309 5' -53 NC_003521.1 + 233047 0.66 0.993799
Target:  5'- gCUGGUGUAAG-GCu-CGUCugCGGCg -3'
miRNA:   3'- aGACCAUGUUUgCGuuGCGGugGCCG- -5'
14309 5' -53 NC_003521.1 + 71368 0.66 0.989476
Target:  5'- cCUGGcgACGAACcCGcCGCCGCCGacGCc -3'
miRNA:   3'- aGACCa-UGUUUGcGUuGCGGUGGC--CG- -5'
14309 5' -53 NC_003521.1 + 38467 0.66 0.994618
Target:  5'- gUCUGGgcuCuGGCG-GugGgCGCCGGCg -3'
miRNA:   3'- -AGACCau-GuUUGCgUugCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 56458 0.66 0.994618
Target:  5'- --aGGUcCGAgagGCGCcGCGCCA-CGGCc -3'
miRNA:   3'- agaCCAuGUU---UGCGuUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 5699 0.66 0.992884
Target:  5'- --gGGaACGGGCGC--CGUCACCGGg -3'
miRNA:   3'- agaCCaUGUUUGCGuuGCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 129938 0.66 0.99073
Target:  5'- cCUGGccgagAC-GGCGCAGuucUGCCGCgGGCc -3'
miRNA:   3'- aGACCa----UGuUUGCGUU---GCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 60743 0.66 0.992884
Target:  5'- cCUGG-ACGGggugacGCGCAACGaCAUCGuGCg -3'
miRNA:   3'- aGACCaUGUU------UGCGUUGCgGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 236671 0.66 0.989476
Target:  5'- gCUGGUccugGgGAAgGgGAgaGCCGCCGGCc -3'
miRNA:   3'- aGACCA----UgUUUgCgUUg-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 45190 0.66 0.989476
Target:  5'- cCUGGccucggagcUGCAgcAACGCGACcaGCUggcggGCCGGCu -3'
miRNA:   3'- aGACC---------AUGU--UUGCGUUG--CGG-----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 163198 0.66 0.994618
Target:  5'- --cGGUG--GugGCGGCGgCAgCGGCa -3'
miRNA:   3'- agaCCAUguUugCGUUGCgGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 155134 0.66 0.994618
Target:  5'- cCUGGa--GAACcuGCGGCGCgugcuggaCGCCGGCu -3'
miRNA:   3'- aGACCaugUUUG--CGUUGCG--------GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 21758 0.66 0.992884
Target:  5'- -aUGGUuccACGAAUGCAACaCCACCa-- -3'
miRNA:   3'- agACCA---UGUUUGCGUUGcGGUGGccg -5'
14309 5' -53 NC_003521.1 + 225537 0.66 0.994618
Target:  5'- gUCg---ACGAACGCu-CGUCACCaGGCa -3'
miRNA:   3'- -AGaccaUGUUUGCGuuGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 96626 0.66 0.989075
Target:  5'- aCUGcUGCAgcuugccguucuccAGCGCGcggcagGCGgCGCCGGCg -3'
miRNA:   3'- aGACcAUGU--------------UUGCGU------UGCgGUGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.