miRNA display CGI


Results 81 - 100 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 32376 0.66 0.992884
Target:  5'- uUUUGGUG---GCGCGugGCCAgguccuCgGGCg -3'
miRNA:   3'- -AGACCAUguuUGCGUugCGGU------GgCCG- -5'
14309 5' -53 NC_003521.1 + 32133 0.66 0.992884
Target:  5'- --aGGUaGCGGGCGCggUGCaccaAgCGGCg -3'
miRNA:   3'- agaCCA-UGUUUGCGuuGCGg---UgGCCG- -5'
14309 5' -53 NC_003521.1 + 151854 0.66 0.992884
Target:  5'- --aGGUACAGGgcgcUGCAGaucaGUCGCCGGg -3'
miRNA:   3'- agaCCAUGUUU----GCGUUg---CGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 232384 0.66 0.991863
Target:  5'- --aGGUcCAccgucucGCGCuggcuGCGCCugCGGCa -3'
miRNA:   3'- agaCCAuGUu------UGCGu----UGCGGugGCCG- -5'
14309 5' -53 NC_003521.1 + 5699 0.66 0.992884
Target:  5'- --gGGaACGGGCGC--CGUCACCGGg -3'
miRNA:   3'- agaCCaUGUUUGCGuuGCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 143177 0.66 0.992884
Target:  5'- --gGGU-CGGACcCGGCGCCGCC-GCg -3'
miRNA:   3'- agaCCAuGUUUGcGUUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 74173 0.66 0.993799
Target:  5'- gCUGGccgACu-GCGCcGCGgCGCCcGGCg -3'
miRNA:   3'- aGACCa--UGuuUGCGuUGCgGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 235304 0.66 0.99073
Target:  5'- aCUGGcgacgACAGAUGCGACGgcuacaCCGCCucuGGUg -3'
miRNA:   3'- aGACCa----UGUUUGCGUUGC------GGUGG---CCG- -5'
14309 5' -53 NC_003521.1 + 37117 0.66 0.99073
Target:  5'- --cGG-ACAAgaucacggcGCGCAACauGCCGCgCGGCu -3'
miRNA:   3'- agaCCaUGUU---------UGCGUUG--CGGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 56598 0.66 0.989476
Target:  5'- -gUGGUugAugacGCGUAugGCCGCCa-- -3'
miRNA:   3'- agACCAugUu---UGCGUugCGGUGGccg -5'
14309 5' -53 NC_003521.1 + 65692 0.66 0.991863
Target:  5'- uUCcGGgaccagGCAAGaaggacaGCGGCGCCgcggcggcccugGCCGGCa -3'
miRNA:   3'- -AGaCCa-----UGUUUg------CGUUGCGG------------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 102870 0.66 0.991863
Target:  5'- gUCUGGgcCGuGCGUAGCGaggCGCagaGGCg -3'
miRNA:   3'- -AGACCauGUuUGCGUUGCg--GUGg--CCG- -5'
14309 5' -53 NC_003521.1 + 172769 0.66 0.99073
Target:  5'- uUCUGGcUGCcaccggGGGCGCcgcggaccACGCCGCCcguGGCg -3'
miRNA:   3'- -AGACC-AUG------UUUGCGu-------UGCGGUGG---CCG- -5'
14309 5' -53 NC_003521.1 + 172134 0.66 0.989476
Target:  5'- cUCUGGUugGuggagaaaauGCGCAGCaUCACCuGCu -3'
miRNA:   3'- -AGACCAugUu---------UGCGUUGcGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 112811 0.66 0.991863
Target:  5'- cUCUGGgACGGcCGCGACcCC-CCGGa -3'
miRNA:   3'- -AGACCaUGUUuGCGUUGcGGuGGCCg -5'
14309 5' -53 NC_003521.1 + 43162 0.66 0.989476
Target:  5'- gCUGGUG---GCGCugcugccgcacgAGCGCCACC-GCg -3'
miRNA:   3'- aGACCAUguuUGCG------------UUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 96770 0.66 0.989476
Target:  5'- -----aACGGuCGCcguCGCCGCCGGCa -3'
miRNA:   3'- agaccaUGUUuGCGuu-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 129690 0.66 0.99061
Target:  5'- gCUGucgACGGGCGagGACGCCcgcuucuGCCGGCc -3'
miRNA:   3'- aGACca-UGUUUGCg-UUGCGG-------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 104615 0.66 0.990366
Target:  5'- gUCUGGUggACAuggacugcgagaagAGCGCcuucaugcucGACGCCGCCGc- -3'
miRNA:   3'- -AGACCA--UGU--------------UUGCG----------UUGCGGUGGCcg -5'
14309 5' -53 NC_003521.1 + 71368 0.66 0.989476
Target:  5'- cCUGGcgACGAACcCGcCGCCGCCGacGCc -3'
miRNA:   3'- aGACCa-UGUUUGcGUuGCGGUGGC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.