miRNA display CGI


Results 101 - 120 of 560 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 126395 0.66 0.993799
Target:  5'- gUCUGGUgccgccACAGgucucggcccuGCGCgAugGCgGCCaGGCg -3'
miRNA:   3'- -AGACCA------UGUU-----------UGCG-UugCGgUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 14438 0.66 0.993535
Target:  5'- -gUGGUGCAcacggcccugcggcGGCGuCAGcCGCCGCucccgCGGCg -3'
miRNA:   3'- agACCAUGU--------------UUGC-GUU-GCGGUG-----GCCG- -5'
14309 5' -53 NC_003521.1 + 105312 0.66 0.993799
Target:  5'- -gUGGggACGccGCGCGACGUCGCC-GCu -3'
miRNA:   3'- agACCa-UGUu-UGCGUUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 155134 0.66 0.994618
Target:  5'- cCUGGa--GAACcuGCGGCGCgugcuggaCGCCGGCu -3'
miRNA:   3'- aGACCaugUUUG--CGUUGCG--------GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 230323 0.66 0.993799
Target:  5'- cCUGGgggGCc-ACGCcauCcCCGCCGGCg -3'
miRNA:   3'- aGACCa--UGuuUGCGuu-GcGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 74173 0.66 0.993799
Target:  5'- gCUGGccgACu-GCGCcGCGgCGCCcGGCg -3'
miRNA:   3'- aGACCa--UGuuUGCGuUGCgGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 111842 0.66 0.994618
Target:  5'- -gUGGUgcccaGCAucgucuuuuuccAGCGCcACGCCGCCaGCc -3'
miRNA:   3'- agACCA-----UGU------------UUGCGuUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 165643 0.66 0.992884
Target:  5'- --cGGUguuGAGCaGCAgcACGCCGCgCGGCa -3'
miRNA:   3'- agaCCAug-UUUG-CGU--UGCGGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 216628 0.66 0.993799
Target:  5'- --cGGUagGCGGGCGCGcCGaCGCCGGg -3'
miRNA:   3'- agaCCA--UGUUUGCGUuGCgGUGGCCg -5'
14309 5' -53 NC_003521.1 + 137162 0.66 0.993799
Target:  5'- -aUGGccGCGGcCGCAGCggccGCCGCCGaGCu -3'
miRNA:   3'- agACCa-UGUUuGCGUUG----CGGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 59930 0.66 0.993799
Target:  5'- cCUGGUcuCcGACGUgGACGCCGaucaacagcCCGGCg -3'
miRNA:   3'- aGACCAu-GuUUGCG-UUGCGGU---------GGCCG- -5'
14309 5' -53 NC_003521.1 + 92087 0.66 0.993799
Target:  5'- gUCggggGGUGCGcAGgGCggUGCC-CCGGg -3'
miRNA:   3'- -AGa---CCAUGU-UUgCGuuGCGGuGGCCg -5'
14309 5' -53 NC_003521.1 + 233047 0.66 0.993799
Target:  5'- gCUGGUGUAAG-GCu-CGUCugCGGCg -3'
miRNA:   3'- aGACCAUGUUUgCGuuGCGGugGCCG- -5'
14309 5' -53 NC_003521.1 + 216971 0.66 0.994618
Target:  5'- uUCUcGUAgAGACaCAGCGCCAgcaggUCGGCc -3'
miRNA:   3'- -AGAcCAUgUUUGcGUUGCGGU-----GGCCG- -5'
14309 5' -53 NC_003521.1 + 145984 0.66 0.994618
Target:  5'- gCUGGc----GCGCuuccCGCUGCCGGCu -3'
miRNA:   3'- aGACCauguuUGCGuu--GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 212363 0.66 0.994382
Target:  5'- gCUGGUGCAccgcccaaggcuggAugGCGACgaagaGCCACagcagCGGUa -3'
miRNA:   3'- aGACCAUGU--------------UugCGUUG-----CGGUG-----GCCG- -5'
14309 5' -53 NC_003521.1 + 38467 0.66 0.994618
Target:  5'- gUCUGGgcuCuGGCG-GugGgCGCCGGCg -3'
miRNA:   3'- -AGACCau-GuUUGCgUugCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 126965 0.66 0.994618
Target:  5'- --cGGaACccGCGCcguCGUCGCCGGCc -3'
miRNA:   3'- agaCCaUGuuUGCGuu-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 89939 0.66 0.994618
Target:  5'- aUCUGGUgGCGGAUgaaaaaGCcGCGUCuCUGGCg -3'
miRNA:   3'- -AGACCA-UGUUUG------CGuUGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 32205 0.66 0.994618
Target:  5'- -aUGGUGgGGAuggcuCGCAACGCgGCCcagacGGCc -3'
miRNA:   3'- agACCAUgUUU-----GCGUUGCGgUGG-----CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.