miRNA display CGI


Results 121 - 140 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 87264 0.66 0.994618
Target:  5'- gCU-GUGCGccguGCGCGugGCCaACgGGCc -3'
miRNA:   3'- aGAcCAUGUu---UGCGUugCGG-UGgCCG- -5'
14309 5' -53 NC_003521.1 + 109334 0.66 0.989476
Target:  5'- --cGGUugAGGCgGCAGCa--GCCGGCg -3'
miRNA:   3'- agaCCAugUUUG-CGUUGcggUGGCCG- -5'
14309 5' -53 NC_003521.1 + 15038 0.66 0.992884
Target:  5'- cCUGGcacccugACGAgcgGCGCgAGCGCgAgCGGCg -3'
miRNA:   3'- aGACCa------UGUU---UGCG-UUGCGgUgGCCG- -5'
14309 5' -53 NC_003521.1 + 111835 0.66 0.992884
Target:  5'- uUCU--UGCAGACGCugcugcgcaaAGCGCCGCCGu- -3'
miRNA:   3'- -AGAccAUGUUUGCG----------UUGCGGUGGCcg -5'
14309 5' -53 NC_003521.1 + 236460 0.66 0.992884
Target:  5'- --cGGgacGCGGGcCGCGAUGagcgaaCCGCCGGCg -3'
miRNA:   3'- agaCCa--UGUUU-GCGUUGC------GGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 14438 0.66 0.993535
Target:  5'- -gUGGUGCAcacggcccugcggcGGCGuCAGcCGCCGCucccgCGGCg -3'
miRNA:   3'- agACCAUGU--------------UUGC-GUU-GCGGUG-----GCCG- -5'
14309 5' -53 NC_003521.1 + 114300 0.66 0.992884
Target:  5'- gCUGGcUGCGcuCGCcuuucucGCGCUACuCGGCc -3'
miRNA:   3'- aGACC-AUGUuuGCGu------UGCGGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 206601 0.66 0.991863
Target:  5'- cUCUGcGgcgacACGGGCGCcgucuACGCCGCCcuGGUg -3'
miRNA:   3'- -AGAC-Ca----UGUUUGCGu----UGCGGUGG--CCG- -5'
14309 5' -53 NC_003521.1 + 27191 0.66 0.992884
Target:  5'- cUCUGGUGuuuCAuccugcuGCGCGGCGaCCGCCa-- -3'
miRNA:   3'- -AGACCAU---GUu------UGCGUUGC-GGUGGccg -5'
14309 5' -53 NC_003521.1 + 153022 0.66 0.993799
Target:  5'- -gUGGUACcuaaGGAUG-AGCGCUACgGGCc -3'
miRNA:   3'- agACCAUG----UUUGCgUUGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 110188 0.66 0.991863
Target:  5'- --aGGUugGggUG-GAgGCCGCUGGCg -3'
miRNA:   3'- agaCCAugUuuGCgUUgCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 94913 0.66 0.99454
Target:  5'- --aGGccguuUGCGAACcgccgcuGCuccCGCCGCCGGCg -3'
miRNA:   3'- agaCC-----AUGUUUG-------CGuu-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 45806 0.66 0.994618
Target:  5'- uUCUaGGgGgAGGCG-AAgGCCACUGGCa -3'
miRNA:   3'- -AGA-CCaUgUUUGCgUUgCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 234700 0.66 0.993624
Target:  5'- uUCUGGUGCuguuccugaacuaucAcaaccagauagccguGGCGgAACGCCgccgcACCGGCc -3'
miRNA:   3'- -AGACCAUG---------------U---------------UUGCgUUGCGG-----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 216614 0.67 0.984736
Target:  5'- gCUGGUGCugcuguuGGACGaCGuuccgcccAUGCCGCCcGGCu -3'
miRNA:   3'- aGACCAUG-------UUUGC-GU--------UGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 183441 0.67 0.98491
Target:  5'- -gUGGcGCGAGauCGACGCC-CUGGCg -3'
miRNA:   3'- agACCaUGUUUgcGUUGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 163896 0.67 0.988093
Target:  5'- --aGGUGCcGACGguGCGUUACuCGGg -3'
miRNA:   3'- agaCCAUGuUUGCguUGCGGUG-GCCg -5'
14309 5' -53 NC_003521.1 + 37041 0.67 0.988093
Target:  5'- -gUGGaUACGGuguGCGUgGACGCCgaaaACCGGCa -3'
miRNA:   3'- agACC-AUGUU---UGCG-UUGCGG----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 47907 0.67 0.988093
Target:  5'- cUCUGG---GAACGCAgaaACuCCACaCGGCg -3'
miRNA:   3'- -AGACCaugUUUGCGU---UGcGGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 186272 0.67 0.98491
Target:  5'- --cGcGU-CAAGCGCAACgucaaaaaGCCGCCGGg -3'
miRNA:   3'- agaC-CAuGUUUGCGUUG--------CGGUGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.