miRNA display CGI


Results 41 - 60 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 16391 0.75 0.752742
Target:  5'- cCUGG-ACcGcucgcccaccACGCAGCGCCugGCCGGCg -3'
miRNA:   3'- aGACCaUGuU----------UGCGUUGCGG--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 108827 0.75 0.733561
Target:  5'- aUCUGGUACGAauuGCGCAGCuCCAgCuGCg -3'
miRNA:   3'- -AGACCAUGUU---UGCGUUGcGGUgGcCG- -5'
14309 5' -53 NC_003521.1 + 15288 0.75 0.751792
Target:  5'- cCUGGUgACGAcgcguucgucgacGCGCGACGgCGCCGaGCg -3'
miRNA:   3'- aGACCA-UGUU-------------UGCGUUGCgGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 184163 0.75 0.733561
Target:  5'- cCUGGUgcGCGAGCGgGAgGUgCACCGGCc -3'
miRNA:   3'- aGACCA--UGUUUGCgUUgCG-GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 174453 0.75 0.723837
Target:  5'- gCUGGUGu---CGCugcuCGCCGCCGGCc -3'
miRNA:   3'- aGACCAUguuuGCGuu--GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 168800 0.75 0.723837
Target:  5'- cCUGGUGCAGgccACGCGGCGCauccugaaGCUGGg -3'
miRNA:   3'- aGACCAUGUU---UGCGUUGCGg-------UGGCCg -5'
14309 5' -53 NC_003521.1 + 97906 0.75 0.723837
Target:  5'- gCUGcUGC-AACGcCGACGUCGCCGGCu -3'
miRNA:   3'- aGACcAUGuUUGC-GUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 39269 0.75 0.714036
Target:  5'- gUUGGaccgaUACAGccGCGCcACGUCGCCGGCg -3'
miRNA:   3'- aGACC-----AUGUU--UGCGuUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 161609 0.75 0.713052
Target:  5'- aUCUGGUGCccucgggcAACGUgcugcguuucuucGGCGCCACCGaGCa -3'
miRNA:   3'- -AGACCAUGu-------UUGCG-------------UUGCGGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 228981 0.74 0.771508
Target:  5'- --aGGUGCGcGgGCGGCGCaggACCGGCa -3'
miRNA:   3'- agaCCAUGUuUgCGUUGCGg--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 88996 0.74 0.780714
Target:  5'- gUCaGGUACAgaAAUGCcGCGggccCCACCGGCg -3'
miRNA:   3'- -AGaCCAUGU--UUGCGuUGC----GGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 200033 0.74 0.78979
Target:  5'- gCUGGcagaGCcuguGACGCAACGCugccuCACCGGCu -3'
miRNA:   3'- aGACCa---UGu---UUGCGUUGCG-----GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 220526 0.74 0.78979
Target:  5'- cCUGGUGC---UGCAugG-CGCCGGCg -3'
miRNA:   3'- aGACCAUGuuuGCGUugCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 73190 0.74 0.798728
Target:  5'- gCUGGccgGCAucGACGUgaccgaccccgAGCGCCugCGGCg -3'
miRNA:   3'- aGACCa--UGU--UUGCG-----------UUGCGGugGCCG- -5'
14309 5' -53 NC_003521.1 + 58424 0.74 0.798728
Target:  5'- --cGGUugACGAAgcCGCAGCGCUGCCGGg -3'
miRNA:   3'- agaCCA--UGUUU--GCGUUGCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 148557 0.74 0.771508
Target:  5'- --cGGUuuGAACGCGucgACGCgACCGGCc -3'
miRNA:   3'- agaCCAugUUUGCGU---UGCGgUGGCCG- -5'
14309 5' -53 NC_003521.1 + 89288 0.74 0.798728
Target:  5'- -aUGGUACAAccCGCGuccGCGCCGCCucuGGCc -3'
miRNA:   3'- agACCAUGUUu-GCGU---UGCGGUGG---CCG- -5'
14309 5' -53 NC_003521.1 + 112393 0.74 0.762181
Target:  5'- cCUGGcu--GGCGCAguGCGCCgACCGGCc -3'
miRNA:   3'- aGACCauguUUGCGU--UGCGG-UGGCCG- -5'
14309 5' -53 NC_003521.1 + 124162 0.74 0.762181
Target:  5'- gCUGccGUGCAGGCGaUAGCGCCugugcgccuGCCGGCu -3'
miRNA:   3'- aGAC--CAUGUUUGC-GUUGCGG---------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 66754 0.74 0.771508
Target:  5'- aCUGGacgACAuccCGCGggugAUGCCGCCGGCc -3'
miRNA:   3'- aGACCa--UGUuu-GCGU----UGCGGUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.