Results 61 - 80 of 560 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14309 | 5' | -53 | NC_003521.1 | + | 73190 | 0.74 | 0.798728 |
Target: 5'- gCUGGccgGCAucGACGUgaccgaccccgAGCGCCugCGGCg -3' miRNA: 3'- aGACCa--UGU--UUGCG-----------UUGCGGugGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 58424 | 0.74 | 0.798728 |
Target: 5'- --cGGUugACGAAgcCGCAGCGCUGCCGGg -3' miRNA: 3'- agaCCA--UGUUU--GCGUUGCGGUGGCCg -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 89288 | 0.74 | 0.798728 |
Target: 5'- -aUGGUACAAccCGCGuccGCGCCGCCucuGGCc -3' miRNA: 3'- agACCAUGUUu-GCGU---UGCGGUGG---CCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 200033 | 0.74 | 0.78979 |
Target: 5'- gCUGGcagaGCcuguGACGCAACGCugccuCACCGGCu -3' miRNA: 3'- aGACCa---UGu---UUGCGUUGCG-----GUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 166159 | 0.74 | 0.78979 |
Target: 5'- --cGGUagaGCGAGCGCAGgGCCGagCGGCg -3' miRNA: 3'- agaCCA---UGUUUGCGUUgCGGUg-GCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 22171 | 0.74 | 0.780714 |
Target: 5'- -gUGGagAgGGACGaGGCGCCGCCGGCc -3' miRNA: 3'- agACCa-UgUUUGCgUUGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 11449 | 0.74 | 0.78979 |
Target: 5'- cUUUGGgccACGAACgacguguacaaGCGACGUCACUGGCa -3' miRNA: 3'- -AGACCa--UGUUUG-----------CGUUGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 32861 | 0.73 | 0.824626 |
Target: 5'- gUCUGGagGCcgaucgguuuGGCGCccGCGCCGCCGGUg -3' miRNA: 3'- -AGACCa-UGu---------UUGCGu-UGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 150959 | 0.73 | 0.84899 |
Target: 5'- ---cGUGCAGucGCGCGACGCggCGCUGGCg -3' miRNA: 3'- agacCAUGUU--UGCGUUGCG--GUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 240467 | 0.73 | 0.84899 |
Target: 5'- --cGGUcGCAGGCGC--CGCCuCCGGCa -3' miRNA: 3'- agaCCA-UGUUUGCGuuGCGGuGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 192090 | 0.73 | 0.807518 |
Target: 5'- gCUuGUGC---UGCAGCGUCGCCGGCg -3' miRNA: 3'- aGAcCAUGuuuGCGUUGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 55010 | 0.73 | 0.84899 |
Target: 5'- --aGGgcuuaAGGCGCAGCGCCAgcgUCGGCg -3' miRNA: 3'- agaCCaug--UUUGCGUUGCGGU---GGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 53397 | 0.73 | 0.841051 |
Target: 5'- uUCUGcagcuccuUGCGGGCGUcgGGCGCCACCGaGCa -3' miRNA: 3'- -AGACc-------AUGUUUGCG--UUGCGGUGGC-CG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 221699 | 0.73 | 0.841051 |
Target: 5'- aCUGGUACAccGGCGgccCGCCACCcGCg -3' miRNA: 3'- aGACCAUGU--UUGCguuGCGGUGGcCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 41997 | 0.73 | 0.836199 |
Target: 5'- --aGGUcGCAGcagcaacacggcggcACGacaGACGCCGCCGGCa -3' miRNA: 3'- agaCCA-UGUU---------------UGCg--UUGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 168078 | 0.73 | 0.832928 |
Target: 5'- --aGGUA-GAGCGCGGCaCCACCGGUc -3' miRNA: 3'- agaCCAUgUUUGCGUUGcGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 63958 | 0.73 | 0.830456 |
Target: 5'- -gUGGaGCugcuGGCGCGGCGCCauaaccagauccugGCCGGCu -3' miRNA: 3'- agACCaUGu---UUGCGUUGCGG--------------UGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 51129 | 0.73 | 0.821257 |
Target: 5'- gCUGGUugagacagcACGAGCGCAGCGacgacagguaaaACCGGCu -3' miRNA: 3'- aGACCA---------UGUUUGCGUUGCgg----------UGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 149621 | 0.73 | 0.84899 |
Target: 5'- -----cGCGAaacgGCGCugGACGCCGCCGGCg -3' miRNA: 3'- agaccaUGUU----UGCG--UUGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 136540 | 0.73 | 0.816154 |
Target: 5'- aUCUGGccuUugAGGCGCGcuuCGCCGCCgacuGGCa -3' miRNA: 3'- -AGACC---AugUUUGCGUu--GCGGUGG----CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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