miRNA display CGI


Results 81 - 100 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 130004 0.73 0.816154
Target:  5'- --cGGcgGCGGcGCGCAACgGCCGCUGGCu -3'
miRNA:   3'- agaCCa-UGUU-UGCGUUG-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 81039 0.73 0.816154
Target:  5'- gUCUGGUugAuguuGACGCAcuGCGCCAaccCCaGCa -3'
miRNA:   3'- -AGACCAugU----UUGCGU--UGCGGU---GGcCG- -5'
14309 5' -53 NC_003521.1 + 104929 0.73 0.807518
Target:  5'- -aUGacgACGAGCGCGACGCCGUCGGUu -3'
miRNA:   3'- agACca-UGUUUGCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 117383 0.73 0.807518
Target:  5'- --cGGUGCAggUGCGgcacGCGCUguGCUGGCa -3'
miRNA:   3'- agaCCAUGUuuGCGU----UGCGG--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 172666 0.73 0.807518
Target:  5'- aCUGGcGCAGACGCAgcaccuGCGCCugauACCaGCa -3'
miRNA:   3'- aGACCaUGUUUGCGU------UGCGG----UGGcCG- -5'
14309 5' -53 NC_003521.1 + 40239 0.73 0.84899
Target:  5'- --cGGUcGCAGGCGC--CGCCuCCGGCa -3'
miRNA:   3'- agaCCA-UGUUUGCGuuGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 197660 0.73 0.84899
Target:  5'- gCUcGUGCGGcaGCAGCGCCACCaGCg -3'
miRNA:   3'- aGAcCAUGUUugCGUUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 129212 0.73 0.807518
Target:  5'- gUCUGGcGCGugguGgGCAguccgGCGCCGCUGGCc -3'
miRNA:   3'- -AGACCaUGUu---UgCGU-----UGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 46809 0.73 0.807518
Target:  5'- gUCUGGau--GACGC--CGCCGCCGGUg -3'
miRNA:   3'- -AGACCauguUUGCGuuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 30696 0.73 0.807518
Target:  5'- --aGGcuUAUAacAACGCGGCGCCGCgGGCu -3'
miRNA:   3'- agaCC--AUGU--UUGCGUUGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 192090 0.73 0.807518
Target:  5'- gCUuGUGC---UGCAGCGUCGCCGGCg -3'
miRNA:   3'- aGAcCAUGuuuGCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 49728 0.73 0.841051
Target:  5'- aCUGGUggACgAGACGCAGCccGCCGCCGcCa -3'
miRNA:   3'- aGACCA--UG-UUUGCGUUG--CGGUGGCcG- -5'
14309 5' -53 NC_003521.1 + 186325 0.73 0.832928
Target:  5'- cCUGGUcC--ACGCcGgGCCGCCGGCc -3'
miRNA:   3'- aGACCAuGuuUGCGuUgCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 21661 0.73 0.84899
Target:  5'- aCUGGaACAcGCuGCGGCGCCuGCUGGUa -3'
miRNA:   3'- aGACCaUGUuUG-CGUUGCGG-UGGCCG- -5'
14309 5' -53 NC_003521.1 + 110458 0.73 0.816154
Target:  5'- -gUGGcGCuGAGCGCGcacgGCGCCugCGGCc -3'
miRNA:   3'- agACCaUG-UUUGCGU----UGCGGugGCCG- -5'
14309 5' -53 NC_003521.1 + 141193 0.73 0.816154
Target:  5'- uUCgcgGGUgGCcguGGCGCuGCGCCGCCGGg -3'
miRNA:   3'- -AGa--CCA-UGu--UUGCGuUGCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 30550 0.73 0.816154
Target:  5'- --cGGUACGGACGCGcCgGCCACagaaGGCc -3'
miRNA:   3'- agaCCAUGUUUGCGUuG-CGGUGg---CCG- -5'
14309 5' -53 NC_003521.1 + 210347 0.73 0.816154
Target:  5'- gCUGGUggugacggagggGCAggUGC-GCGUCAUCGGCa -3'
miRNA:   3'- aGACCA------------UGUuuGCGuUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 106886 0.73 0.816154
Target:  5'- --cGGUAguAgcgGCGCAGCGCCACCaGGa -3'
miRNA:   3'- agaCCAUguU---UGCGUUGCGGUGG-CCg -5'
14309 5' -53 NC_003521.1 + 153369 0.73 0.814439
Target:  5'- uUCUGGUGCcGgcacagcccgucguaGCGCaggAucuccucgugcagguGCGCCACCGGCg -3'
miRNA:   3'- -AGACCAUGuU---------------UGCG---U---------------UGCGGUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.