miRNA display CGI


Results 101 - 120 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 150557 0.72 0.864284
Target:  5'- -gUGGUGCGggugGugGCGGCGgCGgCGGCg -3'
miRNA:   3'- agACCAUGU----UugCGUUGCgGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 83760 0.72 0.871629
Target:  5'- cCUGGgACAggGugGCGGCGCCccccGCCGcGCu -3'
miRNA:   3'- aGACCaUGU--UugCGUUGCGG----UGGC-CG- -5'
14309 5' -53 NC_003521.1 + 18167 0.72 0.856736
Target:  5'- gCUGGgcaGCGuggaGGCGCugcGCGCCuGCCGGCc -3'
miRNA:   3'- aGACCa--UGU----UUGCGu--UGCGG-UGGCCG- -5'
14309 5' -53 NC_003521.1 + 113345 0.72 0.856736
Target:  5'- aCUGGUGac-GCGCAucuCGgCGCUGGCg -3'
miRNA:   3'- aGACCAUguuUGCGUu--GCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 99607 0.72 0.856736
Target:  5'- gUUGGUgaccuGCAGcgcccggcgGCGCAGCGCCA-CGGCc -3'
miRNA:   3'- aGACCA-----UGUU---------UGCGUUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 234292 0.72 0.856736
Target:  5'- cCUGGgGCgGGACGCAGaccgcccuCGUCACCGGUg -3'
miRNA:   3'- aGACCaUG-UUUGCGUU--------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 111161 0.72 0.856736
Target:  5'- --cGGUccGCAuAGCGCGGcCGCC-CCGGCg -3'
miRNA:   3'- agaCCA--UGU-UUGCGUU-GCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 226340 0.72 0.878764
Target:  5'- -aUGGUGCGcGCGCcccgcggguAGCGCCGCgggagCGGCg -3'
miRNA:   3'- agACCAUGUuUGCG---------UUGCGGUG-----GCCG- -5'
14309 5' -53 NC_003521.1 + 157976 0.72 0.878764
Target:  5'- gCUGGUAgcGACGC--CGCCGCCcgcGGCg -3'
miRNA:   3'- aGACCAUguUUGCGuuGCGGUGG---CCG- -5'
14309 5' -53 NC_003521.1 + 168535 0.72 0.878764
Target:  5'- gCUGGcgGCcAGCGCGgcgGCGgCGCUGGCg -3'
miRNA:   3'- aGACCa-UGuUUGCGU---UGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 7653 0.72 0.871629
Target:  5'- cCUGGacaAUAGAUGCcaGACGCUgaaGCCGGCg -3'
miRNA:   3'- aGACCa--UGUUUGCG--UUGCGG---UGGCCG- -5'
14309 5' -53 NC_003521.1 + 123268 0.72 0.883631
Target:  5'- cCUGGUACAgcgugagcGACGaCAGCGUCAgguccgcgggcgacUCGGCg -3'
miRNA:   3'- aGACCAUGU--------UUGC-GUUGCGGU--------------GGCCG- -5'
14309 5' -53 NC_003521.1 + 160758 0.72 0.870177
Target:  5'- uUCUGGUuuuccuuuCGCgcgUGCCGCCGGCg -3'
miRNA:   3'- -AGACCAuguuu---GCGuu-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 79624 0.72 0.885684
Target:  5'- --cGGgGCGAcCGCGGCGCC-UCGGCg -3'
miRNA:   3'- agaCCaUGUUuGCGUUGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 131064 0.72 0.864284
Target:  5'- cUCUGGacGCGGugGCGGCGaCCG-CGGCu -3'
miRNA:   3'- -AGACCa-UGUUugCGUUGC-GGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 149177 0.72 0.864284
Target:  5'- gUCUcGGc----GCGCGuCGCCACCGGCg -3'
miRNA:   3'- -AGA-CCauguuUGCGUuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 141298 0.72 0.864284
Target:  5'- --aGGUGCAggUGCGggcgGCGCC-CCGGa -3'
miRNA:   3'- agaCCAUGUuuGCGU----UGCGGuGGCCg -5'
14309 5' -53 NC_003521.1 + 137689 0.72 0.864284
Target:  5'- cCUGGUGC---UGCAGCaCCGCCGcGCg -3'
miRNA:   3'- aGACCAUGuuuGCGUUGcGGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 115473 0.72 0.864284
Target:  5'- -gUGGUGCAGGgaCAGCGUC-CCGGCg -3'
miRNA:   3'- agACCAUGUUUgcGUUGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 143574 0.72 0.881558
Target:  5'- gCUGGcgggcACGGGCGUcuaccgcggacugcuGACgGCCACCGGCu -3'
miRNA:   3'- aGACCa----UGUUUGCG---------------UUG-CGGUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.