miRNA display CGI


Results 61 - 80 of 560 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 166159 0.74 0.78979
Target:  5'- --cGGUagaGCGAGCGCAGgGCCGagCGGCg -3'
miRNA:   3'- agaCCA---UGUUUGCGUUgCGGUg-GCCG- -5'
14309 5' -53 NC_003521.1 + 11449 0.74 0.78979
Target:  5'- cUUUGGgccACGAACgacguguacaaGCGACGUCACUGGCa -3'
miRNA:   3'- -AGACCa--UGUUUG-----------CGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 200033 0.74 0.78979
Target:  5'- gCUGGcagaGCcuguGACGCAACGCugccuCACCGGCu -3'
miRNA:   3'- aGACCa---UGu---UUGCGUUGCG-----GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 15233 0.74 0.798728
Target:  5'- --cGGc-CGAGCGCGAgGCCGCCGaGCg -3'
miRNA:   3'- agaCCauGUUUGCGUUgCGGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 73190 0.74 0.798728
Target:  5'- gCUGGccgGCAucGACGUgaccgaccccgAGCGCCugCGGCg -3'
miRNA:   3'- aGACCa--UGU--UUGCG-----------UUGCGGugGCCG- -5'
14309 5' -53 NC_003521.1 + 58424 0.74 0.798728
Target:  5'- --cGGUugACGAAgcCGCAGCGCUGCCGGg -3'
miRNA:   3'- agaCCA--UGUUU--GCGUUGCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 89288 0.74 0.798728
Target:  5'- -aUGGUACAAccCGCGuccGCGCCGCCucuGGCc -3'
miRNA:   3'- agACCAUGUUu-GCGU---UGCGGUGG---CCG- -5'
14309 5' -53 NC_003521.1 + 177722 0.73 0.806646
Target:  5'- gCUGGUACugcuggaGGGCggGCAGCG-CGCCGGCg -3'
miRNA:   3'- aGACCAUG-------UUUG--CGUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 30696 0.73 0.807518
Target:  5'- --aGGcuUAUAacAACGCGGCGCCGCgGGCu -3'
miRNA:   3'- agaCC--AUGU--UUGCGUUGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 46809 0.73 0.807518
Target:  5'- gUCUGGau--GACGC--CGCCGCCGGUg -3'
miRNA:   3'- -AGACCauguUUGCGuuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 192090 0.73 0.807518
Target:  5'- gCUuGUGC---UGCAGCGUCGCCGGCg -3'
miRNA:   3'- aGAcCAUGuuuGCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 172666 0.73 0.807518
Target:  5'- aCUGGcGCAGACGCAgcaccuGCGCCugauACCaGCa -3'
miRNA:   3'- aGACCaUGUUUGCGU------UGCGG----UGGcCG- -5'
14309 5' -53 NC_003521.1 + 129212 0.73 0.807518
Target:  5'- gUCUGGcGCGugguGgGCAguccgGCGCCGCUGGCc -3'
miRNA:   3'- -AGACCaUGUu---UgCGU-----UGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 117383 0.73 0.807518
Target:  5'- --cGGUGCAggUGCGgcacGCGCUguGCUGGCa -3'
miRNA:   3'- agaCCAUGUuuGCGU----UGCGG--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 104929 0.73 0.807518
Target:  5'- -aUGacgACGAGCGCGACGCCGUCGGUu -3'
miRNA:   3'- agACca-UGUUUGCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 153369 0.73 0.814439
Target:  5'- uUCUGGUGCcGgcacagcccgucguaGCGCaggAucuccucgugcagguGCGCCACCGGCg -3'
miRNA:   3'- -AGACCAUGuU---------------UGCG---U---------------UGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 106886 0.73 0.816154
Target:  5'- --cGGUAguAgcgGCGCAGCGCCACCaGGa -3'
miRNA:   3'- agaCCAUguU---UGCGUUGCGGUGG-CCg -5'
14309 5' -53 NC_003521.1 + 130004 0.73 0.816154
Target:  5'- --cGGcgGCGGcGCGCAACgGCCGCUGGCu -3'
miRNA:   3'- agaCCa-UGUU-UGCGUUG-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 136540 0.73 0.816154
Target:  5'- aUCUGGccuUugAGGCGCGcuuCGCCGCCgacuGGCa -3'
miRNA:   3'- -AGACC---AugUUUGCGUu--GCGGUGG----CCG- -5'
14309 5' -53 NC_003521.1 + 81039 0.73 0.816154
Target:  5'- gUCUGGUugAuguuGACGCAcuGCGCCAaccCCaGCa -3'
miRNA:   3'- -AGACCAugU----UUGCGU--UGCGGU---GGcCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.