Results 81 - 100 of 560 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14309 | 5' | -53 | NC_003521.1 | + | 136540 | 0.73 | 0.816154 |
Target: 5'- aUCUGGccuUugAGGCGCGcuuCGCCGCCgacuGGCa -3' miRNA: 3'- -AGACC---AugUUUGCGUu--GCGGUGG----CCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 110458 | 0.73 | 0.816154 |
Target: 5'- -gUGGcGCuGAGCGCGcacgGCGCCugCGGCc -3' miRNA: 3'- agACCaUG-UUUGCGU----UGCGGugGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 141193 | 0.73 | 0.816154 |
Target: 5'- uUCgcgGGUgGCcguGGCGCuGCGCCGCCGGg -3' miRNA: 3'- -AGa--CCA-UGu--UUGCGuUGCGGUGGCCg -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 30550 | 0.73 | 0.816154 |
Target: 5'- --cGGUACGGACGCGcCgGCCACagaaGGCc -3' miRNA: 3'- agaCCAUGUUUGCGUuG-CGGUGg---CCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 51129 | 0.73 | 0.821257 |
Target: 5'- gCUGGUugagacagcACGAGCGCAGCGacgacagguaaaACCGGCu -3' miRNA: 3'- aGACCA---------UGUUUGCGUUGCgg----------UGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 32861 | 0.73 | 0.824626 |
Target: 5'- gUCUGGagGCcgaucgguuuGGCGCccGCGCCGCCGGUg -3' miRNA: 3'- -AGACCa-UGu---------UUGCGu-UGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 63958 | 0.73 | 0.830456 |
Target: 5'- -gUGGaGCugcuGGCGCGGCGCCauaaccagauccugGCCGGCu -3' miRNA: 3'- agACCaUGu---UUGCGUUGCGG--------------UGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 186325 | 0.73 | 0.832928 |
Target: 5'- cCUGGUcC--ACGCcGgGCCGCCGGCc -3' miRNA: 3'- aGACCAuGuuUGCGuUgCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 168078 | 0.73 | 0.832928 |
Target: 5'- --aGGUA-GAGCGCGGCaCCACCGGUc -3' miRNA: 3'- agaCCAUgUUUGCGUUGcGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 41997 | 0.73 | 0.836199 |
Target: 5'- --aGGUcGCAGcagcaacacggcggcACGacaGACGCCGCCGGCa -3' miRNA: 3'- agaCCA-UGUU---------------UGCg--UUGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 49728 | 0.73 | 0.841051 |
Target: 5'- aCUGGUggACgAGACGCAGCccGCCGCCGcCa -3' miRNA: 3'- aGACCA--UG-UUUGCGUUG--CGGUGGCcG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 53397 | 0.73 | 0.841051 |
Target: 5'- uUCUGcagcuccuUGCGGGCGUcgGGCGCCACCGaGCa -3' miRNA: 3'- -AGACc-------AUGUUUGCG--UUGCGGUGGC-CG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 221699 | 0.73 | 0.841051 |
Target: 5'- aCUGGUACAccGGCGgccCGCCACCcGCg -3' miRNA: 3'- aGACCAUGU--UUGCguuGCGGUGGcCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 149621 | 0.73 | 0.84899 |
Target: 5'- -----cGCGAaacgGCGCugGACGCCGCCGGCg -3' miRNA: 3'- agaccaUGUU----UGCG--UUGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 150959 | 0.73 | 0.84899 |
Target: 5'- ---cGUGCAGucGCGCGACGCggCGCUGGCg -3' miRNA: 3'- agacCAUGUU--UGCGUUGCG--GUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 240467 | 0.73 | 0.84899 |
Target: 5'- --cGGUcGCAGGCGC--CGCCuCCGGCa -3' miRNA: 3'- agaCCA-UGUUUGCGuuGCGGuGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 55010 | 0.73 | 0.84899 |
Target: 5'- --aGGgcuuaAGGCGCAGCGCCAgcgUCGGCg -3' miRNA: 3'- agaCCaug--UUUGCGUUGCGGU---GGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 197660 | 0.73 | 0.84899 |
Target: 5'- gCUcGUGCGGcaGCAGCGCCACCaGCg -3' miRNA: 3'- aGAcCAUGUUugCGUUGCGGUGGcCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 21661 | 0.73 | 0.84899 |
Target: 5'- aCUGGaACAcGCuGCGGCGCCuGCUGGUa -3' miRNA: 3'- aGACCaUGUuUG-CGUUGCGG-UGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 40239 | 0.73 | 0.84899 |
Target: 5'- --cGGUcGCAGGCGC--CGCCuCCGGCa -3' miRNA: 3'- agaCCA-UGUUUGCGuuGCGGuGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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