miRNA display CGI


Results 101 - 120 of 560 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 99607 0.72 0.856736
Target:  5'- gUUGGUgaccuGCAGcgcccggcgGCGCAGCGCCA-CGGCc -3'
miRNA:   3'- aGACCA-----UGUU---------UGCGUUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 234292 0.72 0.856736
Target:  5'- cCUGGgGCgGGACGCAGaccgcccuCGUCACCGGUg -3'
miRNA:   3'- aGACCaUG-UUUGCGUU--------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 111161 0.72 0.856736
Target:  5'- --cGGUccGCAuAGCGCGGcCGCC-CCGGCg -3'
miRNA:   3'- agaCCA--UGU-UUGCGUU-GCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 2472 0.72 0.856736
Target:  5'- -aUGGgu---ACGCGACGgCGCCGGCc -3'
miRNA:   3'- agACCauguuUGCGUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 113345 0.72 0.856736
Target:  5'- aCUGGUGac-GCGCAucuCGgCGCUGGCg -3'
miRNA:   3'- aGACCAUguuUGCGUu--GCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 18167 0.72 0.856736
Target:  5'- gCUGGgcaGCGuggaGGCGCugcGCGCCuGCCGGCc -3'
miRNA:   3'- aGACCa--UGU----UUGCGu--UGCGG-UGGCCG- -5'
14309 5' -53 NC_003521.1 + 184778 0.72 0.856736
Target:  5'- aUCUGGgGCAAcgcGCGCcugGACGCC-CUGGUg -3'
miRNA:   3'- -AGACCaUGUU---UGCG---UUGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 87150 0.72 0.856736
Target:  5'- gUUGGaGCGGGCGCAguucgugcGCGCgGCCGuGCa -3'
miRNA:   3'- aGACCaUGUUUGCGU--------UGCGgUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 115473 0.72 0.864284
Target:  5'- -gUGGUGCAGGgaCAGCGUC-CCGGCg -3'
miRNA:   3'- agACCAUGUUUgcGUUGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 141298 0.72 0.864284
Target:  5'- --aGGUGCAggUGCGggcgGCGCC-CCGGa -3'
miRNA:   3'- agaCCAUGUuuGCGU----UGCGGuGGCCg -5'
14309 5' -53 NC_003521.1 + 30905 0.72 0.864284
Target:  5'- cCUGGgggaACGAACGUAGCGCCAgCCa-- -3'
miRNA:   3'- aGACCa---UGUUUGCGUUGCGGU-GGccg -5'
14309 5' -53 NC_003521.1 + 17978 0.72 0.864284
Target:  5'- -gUGGUGCGAguACGUGuauCGCCACCcGCa -3'
miRNA:   3'- agACCAUGUU--UGCGUu--GCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 110822 0.72 0.864284
Target:  5'- --cGGccguuGCGCGcCGCCGCCGGCg -3'
miRNA:   3'- agaCCauguuUGCGUuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 150557 0.72 0.864284
Target:  5'- -gUGGUGCGggugGugGCGGCGgCGgCGGCg -3'
miRNA:   3'- agACCAUGU----UugCGUUGCgGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 131064 0.72 0.864284
Target:  5'- cUCUGGacGCGGugGCGGCGaCCG-CGGCu -3'
miRNA:   3'- -AGACCa-UGUUugCGUUGC-GGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 149177 0.72 0.864284
Target:  5'- gUCUcGGc----GCGCGuCGCCACCGGCg -3'
miRNA:   3'- -AGA-CCauguuUGCGUuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 137689 0.72 0.864284
Target:  5'- cCUGGUGC---UGCAGCaCCGCCGcGCg -3'
miRNA:   3'- aGACCAUGuuuGCGUUGcGGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 160758 0.72 0.870177
Target:  5'- uUCUGGUuuuccuuuCGCgcgUGCCGCCGGCg -3'
miRNA:   3'- -AGACCAuguuu---GCGuu-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 7653 0.72 0.871629
Target:  5'- cCUGGacaAUAGAUGCcaGACGCUgaaGCCGGCg -3'
miRNA:   3'- aGACCa--UGUUUGCG--UUGCGG---UGGCCG- -5'
14309 5' -53 NC_003521.1 + 83760 0.72 0.871629
Target:  5'- cCUGGgACAggGugGCGGCGCCccccGCCGcGCu -3'
miRNA:   3'- aGACCaUGU--UugCGUUGCGG----UGGC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.