miRNA display CGI


Results 121 - 140 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 101987 0.72 0.871629
Target:  5'- aUCUGGccGCAGGcCGUAGcCGCCGCCaucaGGCg -3'
miRNA:   3'- -AGACCa-UGUUU-GCGUU-GCGGUGG----CCG- -5'
14309 5' -53 NC_003521.1 + 157976 0.72 0.878764
Target:  5'- gCUGGUAgcGACGC--CGCCGCCcgcGGCg -3'
miRNA:   3'- aGACCAUguUUGCGuuGCGGUGG---CCG- -5'
14309 5' -53 NC_003521.1 + 87384 0.72 0.878764
Target:  5'- gCUGGccUACGAGCGCGACcgGCUgcugcugaccacGCCGGUg -3'
miRNA:   3'- aGACC--AUGUUUGCGUUG--CGG------------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 177576 0.72 0.878764
Target:  5'- aCUcGUcaaaGGugGCGGCGCCGCCGGUu -3'
miRNA:   3'- aGAcCAug--UUugCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 165126 0.72 0.878764
Target:  5'- -gUGGUGCGGACGgGggcuggaccGCGgUGCCGGCg -3'
miRNA:   3'- agACCAUGUUUGCgU---------UGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 168535 0.72 0.878764
Target:  5'- gCUGGcgGCcAGCGCGgcgGCGgCGCUGGCg -3'
miRNA:   3'- aGACCa-UGuUUGCGU---UGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 226340 0.72 0.878764
Target:  5'- -aUGGUGCGcGCGCcccgcggguAGCGCCGCgggagCGGCg -3'
miRNA:   3'- agACCAUGUuUGCG---------UUGCGGUG-----GCCG- -5'
14309 5' -53 NC_003521.1 + 143574 0.72 0.881558
Target:  5'- gCUGGcgggcACGGGCGUcuaccgcggacugcuGACgGCCACCGGCu -3'
miRNA:   3'- aGACCa----UGUUUGCG---------------UUG-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 123268 0.72 0.883631
Target:  5'- cCUGGUACAgcgugagcGACGaCAGCGUCAgguccgcgggcgacUCGGCg -3'
miRNA:   3'- aGACCAUGU--------UUGC-GUUGCGGU--------------GGCCG- -5'
14309 5' -53 NC_003521.1 + 162227 0.72 0.885684
Target:  5'- --gGGUGguAGCGcCGACGgCGCUGGCg -3'
miRNA:   3'- agaCCAUguUUGC-GUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 79624 0.72 0.885684
Target:  5'- --cGGgGCGAcCGCGGCGCC-UCGGCg -3'
miRNA:   3'- agaCCaUGUUuGCGUUGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 183216 0.71 0.889732
Target:  5'- cCUGGagcGCGAcggcACGCugacucgggguuCGCCGCCGGCg -3'
miRNA:   3'- aGACCa--UGUU----UGCGuu----------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 130621 0.71 0.892386
Target:  5'- ---aGUACAAacACGCGcACGCCAgCGGCc -3'
miRNA:   3'- agacCAUGUU--UGCGU-UGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 59154 0.71 0.892386
Target:  5'- gCUGGUGgauCAGcuGCgGCAcgGCGCCGCgGGCa -3'
miRNA:   3'- aGACCAU---GUU--UG-CGU--UGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 84608 0.71 0.892386
Target:  5'- aCUGcGcGCAcgucgucccuucGACGUAggcuuccugacGCGCCACCGGCg -3'
miRNA:   3'- aGAC-CaUGU------------UUGCGU-----------UGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 151298 0.71 0.892386
Target:  5'- cCUGGguuccgACGcGCGCAAgGCgGCCaGGCg -3'
miRNA:   3'- aGACCa-----UGUuUGCGUUgCGgUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 17078 0.71 0.892386
Target:  5'- gCUGGcgGCGAcccACGUuccCGCCACCGGa -3'
miRNA:   3'- aGACCa-UGUU---UGCGuu-GCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 187452 0.71 0.892386
Target:  5'- gCUGGUGCGccgcgucagcggGACGguGCuGCaCAUCGGCu -3'
miRNA:   3'- aGACCAUGU------------UUGCguUG-CG-GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 48540 0.71 0.892386
Target:  5'- --cGGUGCcGACGaacggcguggaGACGCCGCUGGUg -3'
miRNA:   3'- agaCCAUGuUUGCg----------UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 114040 0.71 0.898228
Target:  5'- gCUGGacCAcGCGCAGCGCCagggccuGCCGGa -3'
miRNA:   3'- aGACCauGUuUGCGUUGCGG-------UGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.