miRNA display CGI


Results 61 - 80 of 560 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 180140 0.66 0.992884
Target:  5'- --aGGUcCAGGaGCAGCGCCACCu-- -3'
miRNA:   3'- agaCCAuGUUUgCGUUGCGGUGGccg -5'
14309 5' -53 NC_003521.1 + 27191 0.66 0.992884
Target:  5'- cUCUGGUGuuuCAuccugcuGCGCGGCGaCCGCCa-- -3'
miRNA:   3'- -AGACCAU---GUu------UGCGUUGC-GGUGGccg -5'
14309 5' -53 NC_003521.1 + 111835 0.66 0.992884
Target:  5'- uUCU--UGCAGACGCugcugcgcaaAGCGCCGCCGu- -3'
miRNA:   3'- -AGAccAUGUUUGCG----------UUGCGGUGGCcg -5'
14309 5' -53 NC_003521.1 + 32133 0.66 0.992884
Target:  5'- --aGGUaGCGGGCGCggUGCaccaAgCGGCg -3'
miRNA:   3'- agaCCA-UGUUUGCGuuGCGg---UgGCCG- -5'
14309 5' -53 NC_003521.1 + 60743 0.66 0.992884
Target:  5'- cCUGG-ACGGggugacGCGCAACGaCAUCGuGCg -3'
miRNA:   3'- aGACCaUGUU------UGCGUUGCgGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 21758 0.66 0.992884
Target:  5'- -aUGGUuccACGAAUGCAACaCCACCa-- -3'
miRNA:   3'- agACCA---UGUUUGCGUUGcGGUGGccg -5'
14309 5' -53 NC_003521.1 + 5699 0.66 0.992884
Target:  5'- --gGGaACGGGCGC--CGUCACCGGg -3'
miRNA:   3'- agaCCaUGUUUGCGuuGCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 43378 0.66 0.992884
Target:  5'- -----aGCAuGCGCuGGCGCCGCCuGGCc -3'
miRNA:   3'- agaccaUGUuUGCG-UUGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 215559 0.66 0.992884
Target:  5'- aCUGGUACAccaggccaggGAcCGCGcCGUCaACCGGg -3'
miRNA:   3'- aGACCAUGU----------UU-GCGUuGCGG-UGGCCg -5'
14309 5' -53 NC_003521.1 + 204650 0.66 0.992884
Target:  5'- --aGGUGCGuGgGC-ACGCCGuCCGGg -3'
miRNA:   3'- agaCCAUGUuUgCGuUGCGGU-GGCCg -5'
14309 5' -53 NC_003521.1 + 165643 0.66 0.992884
Target:  5'- --cGGUguuGAGCaGCAgcACGCCGCgCGGCa -3'
miRNA:   3'- agaCCAug-UUUG-CGU--UGCGGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 224666 0.66 0.992786
Target:  5'- gUUGGUcaGCAGcuucagcgucuugGCGUGGCGCC-CgGGCg -3'
miRNA:   3'- aGACCA--UGUU-------------UGCGUUGCGGuGgCCG- -5'
14309 5' -53 NC_003521.1 + 103111 0.66 0.992786
Target:  5'- -gUGGcagGCGAagagcugGCGCAGCGCgCGgCGGUg -3'
miRNA:   3'- agACCa--UGUU-------UGCGUUGCG-GUgGCCG- -5'
14309 5' -53 NC_003521.1 + 59716 0.66 0.992786
Target:  5'- cCUGGUG---GCGCAauucgacACGCCGgauCUGGCc -3'
miRNA:   3'- aGACCAUguuUGCGU-------UGCGGU---GGCCG- -5'
14309 5' -53 NC_003521.1 + 1012 0.66 0.992786
Target:  5'- --cGGcuucUACGcGCGCAucACGCCgcgcagccagaugGCCGGCg -3'
miRNA:   3'- agaCC----AUGUuUGCGU--UGCGG-------------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 201240 0.66 0.992786
Target:  5'- --cGGcuucUACGcGCGCAucACGCCgcgcagccagaugGCCGGCg -3'
miRNA:   3'- agaCC----AUGUuUGCGU--UGCGG-------------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 70257 0.66 0.992589
Target:  5'- gCUGGUggggugcagcacggGCAGGCGCAggucgGCGCCGaagagaaagCGGUg -3'
miRNA:   3'- aGACCA--------------UGUUUGCGU-----UGCGGUg--------GCCG- -5'
14309 5' -53 NC_003521.1 + 206601 0.66 0.991863
Target:  5'- cUCUGcGgcgacACGGGCGCcgucuACGCCGCCcuGGUg -3'
miRNA:   3'- -AGAC-Ca----UGUUUGCGu----UGCGGUGG--CCG- -5'
14309 5' -53 NC_003521.1 + 182976 0.66 0.991863
Target:  5'- gUCUaGcaGCGAcgGCGUucGGCGUCACCGGCc -3'
miRNA:   3'- -AGA-CcaUGUU--UGCG--UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 184968 0.66 0.991863
Target:  5'- --cGGUGCGGGCcaGCGugGaCCugugcaagGCCGGCc -3'
miRNA:   3'- agaCCAUGUUUG--CGUugC-GG--------UGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.