Results 81 - 100 of 560 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14309 | 5' | -53 | NC_003521.1 | + | 167596 | 0.66 | 0.991863 |
Target: 5'- -aUGGagaGCGGcGCGCAgagGCGCCGCaGGCg -3' miRNA: 3'- agACCa--UGUU-UGCGU---UGCGGUGgCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 110188 | 0.66 | 0.991863 |
Target: 5'- --aGGUugGggUG-GAgGCCGCUGGCg -3' miRNA: 3'- agaCCAugUuuGCgUUgCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 97634 | 0.66 | 0.991863 |
Target: 5'- cUCaGGcucgACGuuCGCGGCGgCGCCGGg -3' miRNA: 3'- -AGaCCa---UGUuuGCGUUGCgGUGGCCg -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 205819 | 0.66 | 0.991863 |
Target: 5'- --cGG-GCAcGACGCaAGCGCuCGCUGGCc -3' miRNA: 3'- agaCCaUGU-UUGCG-UUGCG-GUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 182976 | 0.66 | 0.991863 |
Target: 5'- gUCUaGcaGCGAcgGCGUucGGCGUCACCGGCc -3' miRNA: 3'- -AGA-CcaUGUU--UGCG--UUGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 102870 | 0.66 | 0.991863 |
Target: 5'- gUCUGGgcCGuGCGUAGCGaggCGCagaGGCg -3' miRNA: 3'- -AGACCauGUuUGCGUUGCg--GUGg--CCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 112811 | 0.66 | 0.991863 |
Target: 5'- cUCUGGgACGGcCGCGACcCC-CCGGa -3' miRNA: 3'- -AGACCaUGUUuGCGUUGcGGuGGCCg -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 64382 | 0.66 | 0.991863 |
Target: 5'- --aGGUGCGGGCGCGucugcagaACGUggagCGCgGGCu -3' miRNA: 3'- agaCCAUGUUUGCGU--------UGCG----GUGgCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 232384 | 0.66 | 0.991863 |
Target: 5'- --aGGUcCAccgucucGCGCuggcuGCGCCugCGGCa -3' miRNA: 3'- agaCCAuGUu------UGCGu----UGCGGugGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 77617 | 0.66 | 0.991863 |
Target: 5'- --gGGcGCGccCGUGACGgCGCCGGCc -3' miRNA: 3'- agaCCaUGUuuGCGUUGCgGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 70012 | 0.66 | 0.991863 |
Target: 5'- -----aGCGAGCGCAGCGgUACCaGGUa -3' miRNA: 3'- agaccaUGUUUGCGUUGCgGUGG-CCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 68414 | 0.66 | 0.991863 |
Target: 5'- cUCgGGUcccGC-GGCGaCGGCuCCGCCGGCg -3' miRNA: 3'- -AGaCCA---UGuUUGC-GUUGcGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 55174 | 0.66 | 0.991863 |
Target: 5'- cUCgGGcGCGGACGCugaAACaCgACCGGCg -3' miRNA: 3'- -AGaCCaUGUUUGCG---UUGcGgUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 77723 | 0.66 | 0.991863 |
Target: 5'- -gUGGUcguGGCGCuGGCGCCcgaggacggGCCGGCc -3' miRNA: 3'- agACCAuguUUGCG-UUGCGG---------UGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 65692 | 0.66 | 0.991863 |
Target: 5'- uUCcGGgaccagGCAAGaaggacaGCGGCGCCgcggcggcccugGCCGGCa -3' miRNA: 3'- -AGaCCa-----UGUUUg------CGUUGCGG------------UGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 168685 | 0.66 | 0.991755 |
Target: 5'- cCUGGUgGCAGGCcguccucggucagGUGAaucuccacCGCCGCCGGUa -3' miRNA: 3'- aGACCA-UGUUUG-------------CGUU--------GCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 69701 | 0.66 | 0.991755 |
Target: 5'- cCUGGUGuCGGugGCGGCGgCCcugagguACgCGGUa -3' miRNA: 3'- aGACCAU-GUUugCGUUGC-GG-------UG-GCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 70696 | 0.66 | 0.99073 |
Target: 5'- gUCUGcGccGCAAGCuGCGucgGCGCCugcgccggauguACCGGCa -3' miRNA: 3'- -AGAC-Ca-UGUUUG-CGU---UGCGG------------UGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 118288 | 0.66 | 0.99073 |
Target: 5'- --cGGUAgcAGCaGCAcuaccacCGCCGCCGGCc -3' miRNA: 3'- agaCCAUguUUG-CGUu------GCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 129938 | 0.66 | 0.99073 |
Target: 5'- cCUGGccgagAC-GGCGCAGuucUGCCGCgGGCc -3' miRNA: 3'- aGACCa----UGuUUGCGUU---GCGGUGgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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