miRNA display CGI


Results 81 - 100 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 167596 0.66 0.991863
Target:  5'- -aUGGagaGCGGcGCGCAgagGCGCCGCaGGCg -3'
miRNA:   3'- agACCa--UGUU-UGCGU---UGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 110188 0.66 0.991863
Target:  5'- --aGGUugGggUG-GAgGCCGCUGGCg -3'
miRNA:   3'- agaCCAugUuuGCgUUgCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 97634 0.66 0.991863
Target:  5'- cUCaGGcucgACGuuCGCGGCGgCGCCGGg -3'
miRNA:   3'- -AGaCCa---UGUuuGCGUUGCgGUGGCCg -5'
14309 5' -53 NC_003521.1 + 205819 0.66 0.991863
Target:  5'- --cGG-GCAcGACGCaAGCGCuCGCUGGCc -3'
miRNA:   3'- agaCCaUGU-UUGCG-UUGCG-GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 182976 0.66 0.991863
Target:  5'- gUCUaGcaGCGAcgGCGUucGGCGUCACCGGCc -3'
miRNA:   3'- -AGA-CcaUGUU--UGCG--UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 102870 0.66 0.991863
Target:  5'- gUCUGGgcCGuGCGUAGCGaggCGCagaGGCg -3'
miRNA:   3'- -AGACCauGUuUGCGUUGCg--GUGg--CCG- -5'
14309 5' -53 NC_003521.1 + 112811 0.66 0.991863
Target:  5'- cUCUGGgACGGcCGCGACcCC-CCGGa -3'
miRNA:   3'- -AGACCaUGUUuGCGUUGcGGuGGCCg -5'
14309 5' -53 NC_003521.1 + 64382 0.66 0.991863
Target:  5'- --aGGUGCGGGCGCGucugcagaACGUggagCGCgGGCu -3'
miRNA:   3'- agaCCAUGUUUGCGU--------UGCG----GUGgCCG- -5'
14309 5' -53 NC_003521.1 + 232384 0.66 0.991863
Target:  5'- --aGGUcCAccgucucGCGCuggcuGCGCCugCGGCa -3'
miRNA:   3'- agaCCAuGUu------UGCGu----UGCGGugGCCG- -5'
14309 5' -53 NC_003521.1 + 77617 0.66 0.991863
Target:  5'- --gGGcGCGccCGUGACGgCGCCGGCc -3'
miRNA:   3'- agaCCaUGUuuGCGUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 70012 0.66 0.991863
Target:  5'- -----aGCGAGCGCAGCGgUACCaGGUa -3'
miRNA:   3'- agaccaUGUUUGCGUUGCgGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 68414 0.66 0.991863
Target:  5'- cUCgGGUcccGC-GGCGaCGGCuCCGCCGGCg -3'
miRNA:   3'- -AGaCCA---UGuUUGC-GUUGcGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 55174 0.66 0.991863
Target:  5'- cUCgGGcGCGGACGCugaAACaCgACCGGCg -3'
miRNA:   3'- -AGaCCaUGUUUGCG---UUGcGgUGGCCG- -5'
14309 5' -53 NC_003521.1 + 77723 0.66 0.991863
Target:  5'- -gUGGUcguGGCGCuGGCGCCcgaggacggGCCGGCc -3'
miRNA:   3'- agACCAuguUUGCG-UUGCGG---------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 65692 0.66 0.991863
Target:  5'- uUCcGGgaccagGCAAGaaggacaGCGGCGCCgcggcggcccugGCCGGCa -3'
miRNA:   3'- -AGaCCa-----UGUUUg------CGUUGCGG------------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 168685 0.66 0.991755
Target:  5'- cCUGGUgGCAGGCcguccucggucagGUGAaucuccacCGCCGCCGGUa -3'
miRNA:   3'- aGACCA-UGUUUG-------------CGUU--------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 69701 0.66 0.991755
Target:  5'- cCUGGUGuCGGugGCGGCGgCCcugagguACgCGGUa -3'
miRNA:   3'- aGACCAU-GUUugCGUUGC-GG-------UG-GCCG- -5'
14309 5' -53 NC_003521.1 + 70696 0.66 0.99073
Target:  5'- gUCUGcGccGCAAGCuGCGucgGCGCCugcgccggauguACCGGCa -3'
miRNA:   3'- -AGAC-Ca-UGUUUG-CGU---UGCGG------------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 118288 0.66 0.99073
Target:  5'- --cGGUAgcAGCaGCAcuaccacCGCCGCCGGCc -3'
miRNA:   3'- agaCCAUguUUG-CGUu------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 129938 0.66 0.99073
Target:  5'- cCUGGccgagAC-GGCGCAGuucUGCCGCgGGCc -3'
miRNA:   3'- aGACCa----UGuUUGCGUU---GCGGUGgCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.