miRNA display CGI


Results 121 - 140 of 560 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 109334 0.66 0.989476
Target:  5'- --cGGUugAGGCgGCAGCa--GCCGGCg -3'
miRNA:   3'- agaCCAugUUUG-CGUUGcggUGGCCG- -5'
14309 5' -53 NC_003521.1 + 43162 0.66 0.989476
Target:  5'- gCUGGUG---GCGCugcugccgcacgAGCGCCACC-GCg -3'
miRNA:   3'- aGACCAUguuUGCG------------UUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 12675 0.66 0.989476
Target:  5'- -gUGGUugGuGCGC--CGCgACCGGUu -3'
miRNA:   3'- agACCAugUuUGCGuuGCGgUGGCCG- -5'
14309 5' -53 NC_003521.1 + 52655 0.66 0.989476
Target:  5'- --cGGcACGcuucagagagcGGCaGCAGCGgCACCGGCa -3'
miRNA:   3'- agaCCaUGU-----------UUG-CGUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 45190 0.66 0.989476
Target:  5'- cCUGGccucggagcUGCAgcAACGCGACcaGCUggcggGCCGGCu -3'
miRNA:   3'- aGACC---------AUGU--UUGCGUUG--CGG-----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 236671 0.66 0.989476
Target:  5'- gCUGGUccugGgGAAgGgGAgaGCCGCCGGCc -3'
miRNA:   3'- aGACCA----UgUUUgCgUUg-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 31474 0.66 0.989476
Target:  5'- --aGGUACAucACGUAaccGCGUCGCgGGUu -3'
miRNA:   3'- agaCCAUGUu-UGCGU---UGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 172134 0.66 0.989476
Target:  5'- cUCUGGUugGuggagaaaauGCGCAGCaUCACCuGCu -3'
miRNA:   3'- -AGACCAugUu---------UGCGUUGcGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 192612 0.66 0.989476
Target:  5'- --cGGUACGuuuUGCGA-GCCGCCaGCa -3'
miRNA:   3'- agaCCAUGUuu-GCGUUgCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 165036 0.66 0.989343
Target:  5'- -aUGGUGCugcCGCGGCGUCugCaccuggaGGCg -3'
miRNA:   3'- agACCAUGuuuGCGUUGCGGugG-------CCG- -5'
14309 5' -53 NC_003521.1 + 36512 0.66 0.989343
Target:  5'- aCUGGaGCAAcauCGUGACGCCcaaaucguccagcGCCGaGCu -3'
miRNA:   3'- aGACCaUGUUu--GCGUUGCGG-------------UGGC-CG- -5'
14309 5' -53 NC_003521.1 + 96626 0.66 0.989075
Target:  5'- aCUGcUGCAgcuugccguucuccAGCGCGcggcagGCGgCGCCGGCg -3'
miRNA:   3'- aGACcAUGU--------------UUGCGU------UGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 187306 0.66 0.989075
Target:  5'- --cGGUGgGAGCGgccgcgucggacaaCAGCG-CACCGGCu -3'
miRNA:   3'- agaCCAUgUUUGC--------------GUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 67722 0.66 0.989075
Target:  5'- gCUGGUGCAAGUGCucuucaagaucuucuCGCaacaguGCCGGCu -3'
miRNA:   3'- aGACCAUGUUUGCGuu-------------GCGg-----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 85210 0.67 0.988662
Target:  5'- aCUGcGU-CAcccGGCGCcGCGCCggacagagacaugggGCCGGCg -3'
miRNA:   3'- aGAC-CAuGU---UUGCGuUGCGG---------------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 44588 0.67 0.988093
Target:  5'- uUCUGGU-CAGcGCGCGACaCCugCaGCu -3'
miRNA:   3'- -AGACCAuGUU-UGCGUUGcGGugGcCG- -5'
14309 5' -53 NC_003521.1 + 122501 0.67 0.988093
Target:  5'- uUCUGcaggGCcAACGCGGCGgCgggcagGCCGGCg -3'
miRNA:   3'- -AGACca--UGuUUGCGUUGCgG------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 103314 0.67 0.988093
Target:  5'- --cGGUacuccaGCAGGCGCugacGCGCCagcGCCGuGCg -3'
miRNA:   3'- agaCCA------UGUUUGCGu---UGCGG---UGGC-CG- -5'
14309 5' -53 NC_003521.1 + 47907 0.67 0.988093
Target:  5'- cUCUGG---GAACGCAgaaACuCCACaCGGCg -3'
miRNA:   3'- -AGACCaugUUUGCGU---UGcGGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 87207 0.67 0.988093
Target:  5'- gCUGGcGCAGGagcUGCugAGCGCCAacCUGGCg -3'
miRNA:   3'- aGACCaUGUUU---GCG--UUGCGGU--GGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.