miRNA display CGI


Results 141 - 160 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 184714 0.67 0.988093
Target:  5'- gCUGG-GCAAuACGCGACGCUACUu-- -3'
miRNA:   3'- aGACCaUGUU-UGCGUUGCGGUGGccg -5'
14309 5' -53 NC_003521.1 + 163896 0.67 0.988093
Target:  5'- --aGGUGCcGACGguGCGUUACuCGGg -3'
miRNA:   3'- agaCCAUGuUUGCguUGCGGUG-GCCg -5'
14309 5' -53 NC_003521.1 + 37041 0.67 0.988093
Target:  5'- -gUGGaUACGGuguGCGUgGACGCCgaaaACCGGCa -3'
miRNA:   3'- agACC-AUGUU---UGCG-UUGCGG----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 188239 0.67 0.988093
Target:  5'- uUCgGGccaccagcUGCccGCGCGACGUCuucuGCCGGCg -3'
miRNA:   3'- -AGaCC--------AUGuuUGCGUUGCGG----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 190537 0.67 0.988093
Target:  5'- --aGGUGCGgcGGCaGCAGCGgCGgacCCGGCu -3'
miRNA:   3'- agaCCAUGU--UUG-CGUUGCgGU---GGCCG- -5'
14309 5' -53 NC_003521.1 + 47907 0.67 0.988093
Target:  5'- cUCUGG---GAACGCAgaaACuCCACaCGGCg -3'
miRNA:   3'- -AGACCaugUUUGCGU---UGcGGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 126916 0.67 0.988093
Target:  5'- cCUGGcucgcucGCGAACGCccuuuAUGCUGCgGGCg -3'
miRNA:   3'- aGACCa------UGUUUGCGu----UGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 17146 0.67 0.988093
Target:  5'- -gUGGUuccaGCAGcgGCGCGAgGCCgaggcgcagcGCUGGCa -3'
miRNA:   3'- agACCA----UGUU--UGCGUUgCGG----------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 190501 0.67 0.988093
Target:  5'- --cGGUACuuGGCGUccgauucGCGCCguACCGGCc -3'
miRNA:   3'- agaCCAUGu-UUGCGu------UGCGG--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 4338 0.67 0.988093
Target:  5'- ----aUGCcuGGCGCcacCGCCGCCGGCg -3'
miRNA:   3'- agaccAUGu-UUGCGuu-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 127016 0.67 0.988093
Target:  5'- --cGGUGCc--CGaCGACGCCGCC-GCg -3'
miRNA:   3'- agaCCAUGuuuGC-GUUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 64 0.67 0.988093
Target:  5'- aUUGGcGCAAgguuGCGCGugucgcuUGCCGCgGGCg -3'
miRNA:   3'- aGACCaUGUU----UGCGUu------GCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 94277 0.67 0.988093
Target:  5'- aCUGa---GAACGCugcCGCCGCCGGa -3'
miRNA:   3'- aGACcaugUUUGCGuu-GCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 240613 0.67 0.988093
Target:  5'- aUUGGcGCAAgguuGCGCGugucgcuUGCCGCgGGCg -3'
miRNA:   3'- aGACCaUGUU----UGCGUu------GCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 90115 0.67 0.988093
Target:  5'- --cGGccgaGAGC-CAGuCGCCGCCGGCg -3'
miRNA:   3'- agaCCaug-UUUGcGUU-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 122501 0.67 0.988093
Target:  5'- uUCUGcaggGCcAACGCGGCGgCgggcagGCCGGCg -3'
miRNA:   3'- -AGACca--UGuUUGCGUUGCgG------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 152922 0.67 0.988093
Target:  5'- gUCUGGUucaGCGuGCGCAAguccuggauuuCGuCCACCuGCg -3'
miRNA:   3'- -AGACCA---UGUuUGCGUU-----------GC-GGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 87207 0.67 0.988093
Target:  5'- gCUGGcGCAGGagcUGCugAGCGCCAacCUGGCg -3'
miRNA:   3'- aGACCaUGUUU---GCG--UUGCGGU--GGCCG- -5'
14309 5' -53 NC_003521.1 + 100853 0.67 0.988093
Target:  5'- gUUGGUguuccACGAGCGCcucaagAGCGCCcuggacgaGCUGGCc -3'
miRNA:   3'- aGACCA-----UGUUUGCG------UUGCGG--------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 121765 0.67 0.988093
Target:  5'- aCUGGUggAUGAugGUGucgGCCACgGGCa -3'
miRNA:   3'- aGACCA--UGUUugCGUug-CGGUGgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.