miRNA display CGI


Results 61 - 80 of 560 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 31873 0.7 0.932926
Target:  5'- --cGGUGCGAGCGguACcgcaCCGCCaGGCc -3'
miRNA:   3'- agaCCAUGUUUGCguUGc---GGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 32133 0.66 0.992884
Target:  5'- --aGGUaGCGGGCGCggUGCaccaAgCGGCg -3'
miRNA:   3'- agaCCA-UGUUUGCGuuGCGg---UgGCCG- -5'
14309 5' -53 NC_003521.1 + 32205 0.66 0.994618
Target:  5'- -aUGGUGgGGAuggcuCGCAACGCgGCCcagacGGCc -3'
miRNA:   3'- agACCAUgUUU-----GCGUUGCGgUGG-----CCG- -5'
14309 5' -53 NC_003521.1 + 32376 0.66 0.992884
Target:  5'- uUUUGGUG---GCGCGugGCCAgguccuCgGGCg -3'
miRNA:   3'- -AGACCAUguuUGCGUugCGGU------GgCCG- -5'
14309 5' -53 NC_003521.1 + 32720 0.69 0.962182
Target:  5'- --gGGUGgGGGguugGCGACGCCACCaGCg -3'
miRNA:   3'- agaCCAUgUUUg---CGUUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 32861 0.73 0.824626
Target:  5'- gUCUGGagGCcgaucgguuuGGCGCccGCGCCGCCGGUg -3'
miRNA:   3'- -AGACCa-UGu---------UUGCGu-UGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 33203 0.7 0.929897
Target:  5'- --aGGUGCAGGCcgGCGAgcCGCCcagacggaucuugcaGCCGGCg -3'
miRNA:   3'- agaCCAUGUUUG--CGUU--GCGG---------------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 33251 0.7 0.922501
Target:  5'- gCUGGcACAcGCGCAGCag-GCCGGCg -3'
miRNA:   3'- aGACCaUGUuUGCGUUGcggUGGCCG- -5'
14309 5' -53 NC_003521.1 + 33846 0.69 0.95456
Target:  5'- cCUGGggcguCAuuCGCuucguggAACGCCACgGGCu -3'
miRNA:   3'- aGACCau---GUuuGCG-------UUGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 34434 0.69 0.958672
Target:  5'- --cGGUGCGAcuccACGUAgGCGCUGCgGGCc -3'
miRNA:   3'- agaCCAUGUU----UGCGU-UGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 34996 0.68 0.976652
Target:  5'- cUCcgGGgccaGCGAGCGCuuGCGUCGugcCCGGCg -3'
miRNA:   3'- -AGa-CCa---UGUUUGCGu-UGCGGU---GGCCG- -5'
14309 5' -53 NC_003521.1 + 35475 0.67 0.983094
Target:  5'- ---cGUGCAcGGCGCAGCuGCCGCCgccgaggaGGCg -3'
miRNA:   3'- agacCAUGU-UUGCGUUG-CGGUGG--------CCG- -5'
14309 5' -53 NC_003521.1 + 36512 0.66 0.989343
Target:  5'- aCUGGaGCAAcauCGUGACGCCcaaaucguccagcGCCGaGCu -3'
miRNA:   3'- aGACCaUGUUu--GCGUUGCGG-------------UGGC-CG- -5'
14309 5' -53 NC_003521.1 + 36719 0.78 0.593542
Target:  5'- --aGGUGgAGGCGCAgugGCGCCACCaGGUg -3'
miRNA:   3'- agaCCAUgUUUGCGU---UGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 36765 0.67 0.981117
Target:  5'- -gUGGUGCGAcUGCGGCG--ACUGGCa -3'
miRNA:   3'- agACCAUGUUuGCGUUGCggUGGCCG- -5'
14309 5' -53 NC_003521.1 + 37041 0.67 0.988093
Target:  5'- -gUGGaUACGGuguGCGUgGACGCCgaaaACCGGCa -3'
miRNA:   3'- agACC-AUGUU---UGCG-UUGCGG----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 37117 0.66 0.99073
Target:  5'- --cGG-ACAAgaucacggcGCGCAACauGCCGCgCGGCu -3'
miRNA:   3'- agaCCaUGUU---------UGCGUUG--CGGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 37649 0.67 0.983094
Target:  5'- aUCUGGUG--GugGCAuu-CUGCCGGCa -3'
miRNA:   3'- -AGACCAUguUugCGUugcGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 38121 0.66 0.992884
Target:  5'- cUUUGGUGCcguacccacUGCAGCuuUACCGGCg -3'
miRNA:   3'- -AGACCAUGuuu------GCGUUGcgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 38467 0.66 0.994618
Target:  5'- gUCUGGgcuCuGGCG-GugGgCGCCGGCg -3'
miRNA:   3'- -AGACCau-GuUUGCgUugCgGUGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.