miRNA display CGI


Results 81 - 100 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 39001 0.71 0.898866
Target:  5'- gCUGGUG--GAUGUGGCGCUGCaCGGCc -3'
miRNA:   3'- aGACCAUguUUGCGUUGCGGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 39129 0.67 0.98491
Target:  5'- gUCUGcaGCgGGAUGCccguguGCuGCCACCGGCg -3'
miRNA:   3'- -AGACcaUG-UUUGCGu-----UG-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 39269 0.75 0.714036
Target:  5'- gUUGGaccgaUACAGccGCGCcACGUCGCCGGCg -3'
miRNA:   3'- aGACC-----AUGUU--UGCGuUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 40239 0.73 0.84899
Target:  5'- --cGGUcGCAGGCGC--CGCCuCCGGCa -3'
miRNA:   3'- agaCCA-UGUUUGCGuuGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 40386 0.67 0.988093
Target:  5'- aUUGGcGCAAgguuGCGCGugucgcuUGCCGCgGGCg -3'
miRNA:   3'- aGACCaUGUU----UGCGUu------GCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 40743 0.68 0.971457
Target:  5'- gCUGuGUGCug--GCGAgGCCaaGCCGGCg -3'
miRNA:   3'- aGAC-CAUGuuugCGUUgCGG--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 41997 0.73 0.836199
Target:  5'- --aGGUcGCAGcagcaacacggcggcACGacaGACGCCGCCGGCa -3'
miRNA:   3'- agaCCA-UGUU---------------UGCg--UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 42547 0.67 0.983094
Target:  5'- --cGGUcCuc-CGCGACGCCcgGCUGGCu -3'
miRNA:   3'- agaCCAuGuuuGCGUUGCGG--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 42955 0.76 0.654106
Target:  5'- cCUGcagcccaGCGAGCGCGAC-CCGCCGGCg -3'
miRNA:   3'- aGACca-----UGUUUGCGUUGcGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 43162 0.66 0.989476
Target:  5'- gCUGGUG---GCGCugcugccgcacgAGCGCCACC-GCg -3'
miRNA:   3'- aGACCAUguuUGCG------------UUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 43324 0.66 0.994618
Target:  5'- --cGGaACGAACacuGCuccGCGCCGuCCGGCc -3'
miRNA:   3'- agaCCaUGUUUG---CGu--UGCGGU-GGCCG- -5'
14309 5' -53 NC_003521.1 + 43378 0.66 0.992884
Target:  5'- -----aGCAuGCGCuGGCGCCGCCuGGCc -3'
miRNA:   3'- agaccaUGUuUGCG-UUGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 43818 0.69 0.962182
Target:  5'- --aGGUGCAcuGACGaCGGCuUCACUGGCg -3'
miRNA:   3'- agaCCAUGU--UUGC-GUUGcGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 44087 0.79 0.502058
Target:  5'- --cGGUGCAGGCGCcgccgccaccaccguCGCCGCCGGUg -3'
miRNA:   3'- agaCCAUGUUUGCGuu-------------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 44484 0.7 0.946822
Target:  5'- cCUGuccaACGuGACGCAGCGCaacaACCGGCc -3'
miRNA:   3'- aGACca--UGU-UUGCGUUGCGg---UGGCCG- -5'
14309 5' -53 NC_003521.1 + 44588 0.67 0.988093
Target:  5'- uUCUGGU-CAGcGCGCGACaCCugCaGCu -3'
miRNA:   3'- -AGACCAuGUU-UGCGUUGcGGugGcCG- -5'
14309 5' -53 NC_003521.1 + 44802 0.66 0.99073
Target:  5'- cCUGcUGCAGAUGCucACGCagcugcacgagGCCGGCg -3'
miRNA:   3'- aGACcAUGUUUGCGu-UGCGg----------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 45190 0.66 0.989476
Target:  5'- cCUGGccucggagcUGCAgcAACGCGACcaGCUggcggGCCGGCu -3'
miRNA:   3'- aGACC---------AUGU--UUGCGUUG--CGG-----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 45446 0.69 0.95456
Target:  5'- --cGGUACGGGCGCcucguccucgGGCGUCAccuucacCCGGCc -3'
miRNA:   3'- agaCCAUGUUUGCG----------UUGCGGU-------GGCCG- -5'
14309 5' -53 NC_003521.1 + 45533 0.71 0.905119
Target:  5'- cUUGGaGCGGGCGCccCGUCAgCGGCg -3'
miRNA:   3'- aGACCaUGUUUGCGuuGCGGUgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.