miRNA display CGI


Results 101 - 120 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 45630 0.69 0.954945
Target:  5'- -----cGCAGACGgcCAcCGCCGCCGGCu -3'
miRNA:   3'- agaccaUGUUUGC--GUuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 45806 0.66 0.994618
Target:  5'- uUCUaGGgGgAGGCG-AAgGCCACUGGCa -3'
miRNA:   3'- -AGA-CCaUgUUUGCgUUgCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 46809 0.73 0.807518
Target:  5'- gUCUGGau--GACGC--CGCCGCCGGUg -3'
miRNA:   3'- -AGACCauguUUGCGuuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 47907 0.67 0.988093
Target:  5'- cUCUGG---GAACGCAgaaACuCCACaCGGCg -3'
miRNA:   3'- -AGACCaugUUUGCGU---UGcGGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 48540 0.71 0.892386
Target:  5'- --cGGUGCcGACGaacggcguggaGACGCCGCUGGUg -3'
miRNA:   3'- agaCCAUGuUUGCg----------UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 49118 0.68 0.971457
Target:  5'- -gUGGUGac--CGCGGCGCCGCUGcuGCg -3'
miRNA:   3'- agACCAUguuuGCGUUGCGGUGGC--CG- -5'
14309 5' -53 NC_003521.1 + 49664 0.7 0.92783
Target:  5'- aUCUGGagaggggccggGCGAGCGCGGCGCUgucGCCGuCa -3'
miRNA:   3'- -AGACCa----------UGUUUGCGUUGCGG---UGGCcG- -5'
14309 5' -53 NC_003521.1 + 49728 0.73 0.841051
Target:  5'- aCUGGUggACgAGACGCAGCccGCCGCCGcCa -3'
miRNA:   3'- aGACCA--UG-UUUGCGUUG--CGGUGGCcG- -5'
14309 5' -53 NC_003521.1 + 51129 0.73 0.821257
Target:  5'- gCUGGUugagacagcACGAGCGCAGCGacgacagguaaaACCGGCu -3'
miRNA:   3'- aGACCA---------UGUUUGCGUUGCgg----------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 52294 0.7 0.932926
Target:  5'- -aUGGU--GAugGCGACGuggggcCCGCCGGCc -3'
miRNA:   3'- agACCAugUUugCGUUGC------GGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 52655 0.66 0.989476
Target:  5'- --cGGcACGcuucagagagcGGCaGCAGCGgCACCGGCa -3'
miRNA:   3'- agaCCaUGU-----------UUG-CGUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 53216 0.7 0.946822
Target:  5'- cUCgccgGGgaguccGCGGGCGaAGCGaCCGCCGGCg -3'
miRNA:   3'- -AGa---CCa-----UGUUUGCgUUGC-GGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 53397 0.73 0.841051
Target:  5'- uUCUGcagcuccuUGCGGGCGUcgGGCGCCACCGaGCa -3'
miRNA:   3'- -AGACc-------AUGUUUGCG--UUGCGGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 53508 0.68 0.976652
Target:  5'- --cGGUGCGcuguuguccGACGCGGCcgcucCCACCGGg -3'
miRNA:   3'- agaCCAUGU---------UUGCGUUGc----GGUGGCCg -5'
14309 5' -53 NC_003521.1 + 53882 0.7 0.946822
Target:  5'- gCUGcucgaGUGCGuuCGCcgccgccccCGCCACCGGCg -3'
miRNA:   3'- aGAC-----CAUGUuuGCGuu-------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 53956 0.67 0.983094
Target:  5'- gCUGGgccgACGAGCcguGCugcACGCCGCCgcugGGCc -3'
miRNA:   3'- aGACCa---UGUUUG---CGu--UGCGGUGG----CCG- -5'
14309 5' -53 NC_003521.1 + 54887 0.66 0.993799
Target:  5'- aUCUGGacacGCAGuggcuGCGCAcCGUuugcaggaucagCGCCGGCg -3'
miRNA:   3'- -AGACCa---UGUU-----UGCGUuGCG------------GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 55010 0.73 0.84899
Target:  5'- --aGGgcuuaAGGCGCAGCGCCAgcgUCGGCg -3'
miRNA:   3'- agaCCaug--UUUGCGUUGCGGU---GGCCG- -5'
14309 5' -53 NC_003521.1 + 55174 0.66 0.991863
Target:  5'- cUCgGGcGCGGACGCugaAACaCgACCGGCg -3'
miRNA:   3'- -AGaCCaUGUUUGCG---UUGcGgUGGCCG- -5'
14309 5' -53 NC_003521.1 + 55526 0.68 0.97415
Target:  5'- aCgGGUAC--GCGCAGCGagCGCCGcGCc -3'
miRNA:   3'- aGaCCAUGuuUGCGUUGCg-GUGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.