miRNA display CGI


Results 121 - 140 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 55778 0.7 0.937313
Target:  5'- --cGGUACAgcucgaaGAUGaacuUGCCGCCGGCa -3'
miRNA:   3'- agaCCAUGU-------UUGCguu-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 55814 0.69 0.958672
Target:  5'- -aUGGUGCGcucgaaccAGuCGCAGCGCggcagGCCGGCc -3'
miRNA:   3'- agACCAUGU--------UU-GCGUUGCGg----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 56458 0.66 0.994618
Target:  5'- --aGGUcCGAgagGCGCcGCGCCA-CGGCc -3'
miRNA:   3'- agaCCAuGUU---UGCGuUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 56598 0.66 0.989476
Target:  5'- -gUGGUugAugacGCGUAugGCCGCCa-- -3'
miRNA:   3'- agACCAugUu---UGCGUugCGGUGGccg -5'
14309 5' -53 NC_003521.1 + 57010 0.66 0.989476
Target:  5'- --cGGUcACGGACGC--CGCCACgCGGa -3'
miRNA:   3'- agaCCA-UGUUUGCGuuGCGGUG-GCCg -5'
14309 5' -53 NC_003521.1 + 57684 0.68 0.978972
Target:  5'- gUCUGGgucUGCAcgggGAUGCGAcCGCCgcaACCGGg -3'
miRNA:   3'- -AGACC---AUGU----UUGCGUU-GCGG---UGGCCg -5'
14309 5' -53 NC_003521.1 + 58424 0.74 0.798728
Target:  5'- --cGGUugACGAAgcCGCAGCGCUGCCGGg -3'
miRNA:   3'- agaCCA--UGUUU--GCGUUGCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 58766 0.71 0.916939
Target:  5'- --aGGUccagccacuGCAGG-GCGGCGCgCGCCGGCg -3'
miRNA:   3'- agaCCA---------UGUUUgCGUUGCG-GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 58931 0.74 0.771508
Target:  5'- cCUGGUAUAccACG-AACGUCAUCGGCg -3'
miRNA:   3'- aGACCAUGUu-UGCgUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 59154 0.71 0.892386
Target:  5'- gCUGGUGgauCAGcuGCgGCAcgGCGCCGCgGGCa -3'
miRNA:   3'- aGACCAU---GUU--UG-CGU--UGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 59422 0.71 0.898866
Target:  5'- -gUGGcACGcGACaGCGGCGCCgccGCCGGCa -3'
miRNA:   3'- agACCaUGU-UUG-CGUUGCGG---UGGCCG- -5'
14309 5' -53 NC_003521.1 + 59607 0.68 0.976652
Target:  5'- --cGGUA--GugGCGGCgGCC-CCGGCg -3'
miRNA:   3'- agaCCAUguUugCGUUG-CGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 59716 0.66 0.992786
Target:  5'- cCUGGUG---GCGCAauucgacACGCCGgauCUGGCc -3'
miRNA:   3'- aGACCAUguuUGCGU-------UGCGGU---GGCCG- -5'
14309 5' -53 NC_003521.1 + 59820 0.66 0.992884
Target:  5'- --cGGUGC-GACGCAgugagAC-CUACCGGUa -3'
miRNA:   3'- agaCCAUGuUUGCGU-----UGcGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 59930 0.66 0.993799
Target:  5'- cCUGGUcuCcGACGUgGACGCCGaucaacagcCCGGCg -3'
miRNA:   3'- aGACCAu-GuUUGCG-UUGCGGU---------GGCCG- -5'
14309 5' -53 NC_003521.1 + 59968 0.69 0.954945
Target:  5'- --cGGaACAAAucCGCGACgucaGCUACCGGCu -3'
miRNA:   3'- agaCCaUGUUU--GCGUUG----CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 60743 0.66 0.992884
Target:  5'- cCUGG-ACGGggugacGCGCAACGaCAUCGuGCg -3'
miRNA:   3'- aGACCaUGUU------UGCGUUGCgGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 61559 0.66 0.993799
Target:  5'- -----aACGGAgGUAACGCUGCUGGCc -3'
miRNA:   3'- agaccaUGUUUgCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 61735 0.76 0.698217
Target:  5'- aCUGGUACAGgaggcGCGCAGuuuucagccguucccCGUCACCGGg -3'
miRNA:   3'- aGACCAUGUU-----UGCGUU---------------GCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 62134 0.7 0.922501
Target:  5'- cCUGGUACcuGAGCgGCcGCGaCCACCcGGUg -3'
miRNA:   3'- aGACCAUG--UUUG-CGuUGC-GGUGG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.