miRNA display CGI


Results 41 - 60 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 213566 0.69 0.950996
Target:  5'- --aGcGUGCGaccGACaGCAGCGCCacguagcaGCCGGCg -3'
miRNA:   3'- agaC-CAUGU---UUG-CGUUGCGG--------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 213286 0.66 0.994618
Target:  5'- --cGGUGgAGAcCGUcuACGCCACCgugGGCg -3'
miRNA:   3'- agaCCAUgUUU-GCGu-UGCGGUGG---CCG- -5'
14309 5' -53 NC_003521.1 + 212846 0.66 0.994618
Target:  5'- gCUGccGCcGugGCcgugAGCGCCGCCuGGCg -3'
miRNA:   3'- aGACcaUGuUugCG----UUGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 212363 0.66 0.994382
Target:  5'- gCUGGUGCAccgcccaaggcuggAugGCGACgaagaGCCACagcagCGGUa -3'
miRNA:   3'- aGACCAUGU--------------UugCGUUG-----CGGUG-----GCCG- -5'
14309 5' -53 NC_003521.1 + 212095 0.69 0.954945
Target:  5'- gUCUGGUugucGGCGU-GCGCCACCaucuGGCg -3'
miRNA:   3'- -AGACCAugu-UUGCGuUGCGGUGG----CCG- -5'
14309 5' -53 NC_003521.1 + 211694 0.67 0.981117
Target:  5'- gCUGGUGCuggauguagcAGCGCAGCGCgCGgauggugCGGCg -3'
miRNA:   3'- aGACCAUGu---------UUGCGUUGCG-GUg------GCCG- -5'
14309 5' -53 NC_003521.1 + 210950 0.66 0.99073
Target:  5'- --aGGUGCAA---CAGCGCCA-CGGCc -3'
miRNA:   3'- agaCCAUGUUugcGUUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 210575 0.76 0.678253
Target:  5'- gCUGGccacgGCAAccgcgcggaccugcaGCGCGACGCCaacgGCCGGCc -3'
miRNA:   3'- aGACCa----UGUU---------------UGCGUUGCGG----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 210347 0.73 0.816154
Target:  5'- gCUGGUggugacggagggGCAggUGC-GCGUCAUCGGCa -3'
miRNA:   3'- aGACCA------------UGUuuGCGuUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 210189 0.67 0.981117
Target:  5'- -----aGCAGGCGCGcCGCCGgUGGCg -3'
miRNA:   3'- agaccaUGUUUGCGUuGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 208954 0.69 0.962182
Target:  5'- --cGGUGCGGuaccgcuCGCAccGCGCCGCCGu- -3'
miRNA:   3'- agaCCAUGUUu------GCGU--UGCGGUGGCcg -5'
14309 5' -53 NC_003521.1 + 208889 0.67 0.983094
Target:  5'- cCUGGaccccgAgGAGCGCGAgGUCAUCGcGCg -3'
miRNA:   3'- aGACCa-----UgUUUGCGUUgCGGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 208691 0.67 0.986574
Target:  5'- cUUGGUGCAccGCGCc-CGCUACCuGCc -3'
miRNA:   3'- aGACCAUGUu-UGCGuuGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 207514 0.66 0.993799
Target:  5'- cCUGGUuCAAGCaCAcCuUCGCCGGCa -3'
miRNA:   3'- aGACCAuGUUUGcGUuGcGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 206601 0.66 0.991863
Target:  5'- cUCUGcGgcgacACGGGCGCcgucuACGCCGCCcuGGUg -3'
miRNA:   3'- -AGAC-Ca----UGUUUGCGu----UGCGGUGG--CCG- -5'
14309 5' -53 NC_003521.1 + 206457 0.69 0.965479
Target:  5'- gCUGGU----GCGCAACGCCcaggACCugGGCc -3'
miRNA:   3'- aGACCAuguuUGCGUUGCGG----UGG--CCG- -5'
14309 5' -53 NC_003521.1 + 205819 0.66 0.991863
Target:  5'- --cGG-GCAcGACGCaAGCGCuCGCUGGCc -3'
miRNA:   3'- agaCCaUGU-UUGCG-UUGCG-GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 204650 0.66 0.992884
Target:  5'- --aGGUGCGuGgGC-ACGCCGuCCGGg -3'
miRNA:   3'- agaCCAUGUuUgCGuUGCGGU-GGCCg -5'
14309 5' -53 NC_003521.1 + 203326 0.77 0.602601
Target:  5'- aUCUGGUACAgcGugGCGAUGggggugcCCugCGGCa -3'
miRNA:   3'- -AGACCAUGU--UugCGUUGC-------GGugGCCG- -5'
14309 5' -53 NC_003521.1 + 203095 0.67 0.986574
Target:  5'- -----cACAGACgauauaaaGCAGCGCCGCCuGGCc -3'
miRNA:   3'- agaccaUGUUUG--------CGUUGCGGUGG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.