miRNA display CGI


Results 61 - 80 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 202822 0.7 0.92783
Target:  5'- aCUGGUgguccaacgACAGGCGCA--GCUGCCGGa -3'
miRNA:   3'- aGACCA---------UGUUUGCGUugCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 201665 0.77 0.64401
Target:  5'- aCUGGgccGCGAGCu--GCGCCGCCGGUg -3'
miRNA:   3'- aGACCa--UGUUUGcguUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 201240 0.66 0.992786
Target:  5'- --cGGcuucUACGcGCGCAucACGCCgcgcagccagaugGCCGGCg -3'
miRNA:   3'- agaCC----AUGUuUGCGU--UGCGG-------------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 200978 0.68 0.96827
Target:  5'- ---cGUGCAAgccccACGCcggaggccaagcaGGCGCCAUCGGCg -3'
miRNA:   3'- agacCAUGUU-----UGCG-------------UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 200491 0.7 0.942421
Target:  5'- cCUGGc-CAAACugGCGGCGCgCACCGaGCu -3'
miRNA:   3'- aGACCauGUUUG--CGUUGCG-GUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 200033 0.74 0.78979
Target:  5'- gCUGGcagaGCcuguGACGCAACGCugccuCACCGGCu -3'
miRNA:   3'- aGACCa---UGu---UUGCGUUGCG-----GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 199787 0.66 0.991863
Target:  5'- -gUGGUACGGAuggccUGCAGCGUCuccguCUGGUu -3'
miRNA:   3'- agACCAUGUUU-----GCGUUGCGGu----GGCCG- -5'
14309 5' -53 NC_003521.1 + 199474 0.69 0.965479
Target:  5'- --aGGUGCGacgguggauGACGCGAUaGCgAUCGGCg -3'
miRNA:   3'- agaCCAUGU---------UUGCGUUG-CGgUGGCCG- -5'
14309 5' -53 NC_003521.1 + 198789 0.7 0.942421
Target:  5'- -gUGGguaGCAGcuGCGUggUGCCGgCGGCg -3'
miRNA:   3'- agACCa--UGUU--UGCGuuGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 198611 0.81 0.44012
Target:  5'- -gUGGUGCGAuUGCGACaGCCGCUGGCc -3'
miRNA:   3'- agACCAUGUUuGCGUUG-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 198208 0.74 0.771508
Target:  5'- -aUGGc---GGCGaCGGCGCCGCCGGCg -3'
miRNA:   3'- agACCauguUUGC-GUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 197807 0.67 0.981117
Target:  5'- gCUGGUugAAGagcgUGCAgacGCGCgACaCGGCc -3'
miRNA:   3'- aGACCAugUUU----GCGU---UGCGgUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 197660 0.73 0.84899
Target:  5'- gCUcGUGCGGcaGCAGCGCCACCaGCg -3'
miRNA:   3'- aGAcCAUGUUugCGUUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 197323 0.7 0.946822
Target:  5'- aUCUGGUcggcCAGGCccuggGCGAgGUCAUCGGCu -3'
miRNA:   3'- -AGACCAu---GUUUG-----CGUUgCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 197261 0.84 0.284527
Target:  5'- --cGGUGCuuGACGCGGCGCCGgCGGCg -3'
miRNA:   3'- agaCCAUGu-UUGCGUUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 196909 0.7 0.941968
Target:  5'- gUCgGG-ACGAaaguugaGCGCGuCGuCCACCGGCa -3'
miRNA:   3'- -AGaCCaUGUU-------UGCGUuGC-GGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 196859 0.71 0.898866
Target:  5'- cUCUGcGUcaGCAugucgaGCAGCaGCCGCCGGUg -3'
miRNA:   3'- -AGAC-CA--UGUuug---CGUUG-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 196708 0.67 0.98609
Target:  5'- -gUGGUugGccagGAUGCAgaucuugacgaucuGCuggGCCACCGGCu -3'
miRNA:   3'- agACCAugU----UUGCGU--------------UG---CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 196554 0.67 0.984382
Target:  5'- --aGGUGCAcgcugaucuccuccGGCGUGACGCCggacucccgcGCaCGGCg -3'
miRNA:   3'- agaCCAUGU--------------UUGCGUUGCGG----------UG-GCCG- -5'
14309 5' -53 NC_003521.1 + 194929 0.68 0.978972
Target:  5'- gCUGGUGCucGGCGU--CGUCuuggacGCCGGCg -3'
miRNA:   3'- aGACCAUGu-UUGCGuuGCGG------UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.