miRNA display CGI


Results 81 - 100 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 194694 0.7 0.946822
Target:  5'- cUCUGGgacaugccucccUGCGAACGCuGCGuCCGgaGGCg -3'
miRNA:   3'- -AGACC------------AUGUUUGCGuUGC-GGUggCCG- -5'
14309 5' -53 NC_003521.1 + 192612 0.66 0.989476
Target:  5'- --cGGUACGuuuUGCGA-GCCGCCaGCa -3'
miRNA:   3'- agaCCAUGUuu-GCGUUgCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 192450 0.67 0.98491
Target:  5'- --aGGgGC-AugGCGGCGgCGCCGGUu -3'
miRNA:   3'- agaCCaUGuUugCGUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 192090 0.73 0.807518
Target:  5'- gCUuGUGC---UGCAGCGUCGCCGGCg -3'
miRNA:   3'- aGAcCAUGuuuGCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 192047 0.68 0.97415
Target:  5'- -gUGcGcgGCAGACGCGGCGuCCG-CGGCg -3'
miRNA:   3'- agAC-Ca-UGUUUGCGUUGC-GGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 191887 0.68 0.976652
Target:  5'- aCUGGgcgGC-GGCGCcACGUccuucacggaCACCGGCu -3'
miRNA:   3'- aGACCa--UGuUUGCGuUGCG----------GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 191240 0.67 0.981117
Target:  5'- cUUGGga-GGAgGCGGCGCCG-CGGCc -3'
miRNA:   3'- aGACCaugUUUgCGUUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 191133 0.7 0.932427
Target:  5'- aUCUGGcagGCugacGGCGaCAGCGCCGcgcucgcCCGGCc -3'
miRNA:   3'- -AGACCa--UGu---UUGC-GUUGCGGU-------GGCCG- -5'
14309 5' -53 NC_003521.1 + 190537 0.67 0.988093
Target:  5'- --aGGUGCGgcGGCaGCAGCGgCGgacCCGGCu -3'
miRNA:   3'- agaCCAUGU--UUG-CGUUGCgGU---GGCCG- -5'
14309 5' -53 NC_003521.1 + 190501 0.67 0.988093
Target:  5'- --cGGUACuuGGCGUccgauucGCGCCguACCGGCc -3'
miRNA:   3'- agaCCAUGu-UUGCGu------UGCGG--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 188239 0.67 0.988093
Target:  5'- uUCgGGccaccagcUGCccGCGCGACGUCuucuGCCGGCg -3'
miRNA:   3'- -AGaCC--------AUGuuUGCGUUGCGG----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 188128 0.71 0.898866
Target:  5'- aCUGGUG-GAGCGgcuggcaccgcCGACGCUGCCGGUg -3'
miRNA:   3'- aGACCAUgUUUGC-----------GUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 187619 0.66 0.99073
Target:  5'- cCUGccggGCGAGCcggGCcgcGCGCCGCUGGCc -3'
miRNA:   3'- aGACca--UGUUUG---CGu--UGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 187582 0.66 0.992884
Target:  5'- cUCUGcUGCGAcCGCuuucUGCUGCCGGUg -3'
miRNA:   3'- -AGACcAUGUUuGCGuu--GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 187452 0.71 0.892386
Target:  5'- gCUGGUGCGccgcgucagcggGACGguGCuGCaCAUCGGCu -3'
miRNA:   3'- aGACCAUGU------------UUGCguUG-CG-GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 187306 0.66 0.989075
Target:  5'- --cGGUGgGAGCGgccgcgucggacaaCAGCG-CACCGGCu -3'
miRNA:   3'- agaCCAUgUUUGC--------------GUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 186663 0.68 0.971457
Target:  5'- --cGGUGgCGGAgGCGGCgGCCucuccaacGCCGGCg -3'
miRNA:   3'- agaCCAU-GUUUgCGUUG-CGG--------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 186325 0.73 0.832928
Target:  5'- cCUGGUcC--ACGCcGgGCCGCCGGCc -3'
miRNA:   3'- aGACCAuGuuUGCGuUgCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 186272 0.67 0.98491
Target:  5'- --cGcGU-CAAGCGCAACgucaaaaaGCCGCCGGg -3'
miRNA:   3'- agaC-CAuGUUUGCGUUG--------CGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 185016 0.79 0.514524
Target:  5'- aCUGGUuCGAGCGCAccaucuAUGCCGgCGGCa -3'
miRNA:   3'- aGACCAuGUUUGCGU------UGCGGUgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.