miRNA display CGI


Results 101 - 120 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 184968 0.66 0.991863
Target:  5'- --cGGUGCGGGCcaGCGugGaCCugugcaagGCCGGCc -3'
miRNA:   3'- agaCCAUGUUUG--CGUugC-GG--------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 184821 0.67 0.98491
Target:  5'- aCUGGUG-GGugGagAACGCCguggACCGGCu -3'
miRNA:   3'- aGACCAUgUUugCg-UUGCGG----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 184778 0.72 0.856736
Target:  5'- aUCUGGgGCAAcgcGCGCcugGACGCC-CUGGUg -3'
miRNA:   3'- -AGACCaUGUU---UGCG---UUGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 184714 0.67 0.988093
Target:  5'- gCUGG-GCAAuACGCGACGCUACUu-- -3'
miRNA:   3'- aGACCaUGUU-UGCGUUGCGGUGGccg -5'
14309 5' -53 NC_003521.1 + 184629 0.8 0.495399
Target:  5'- --cGGUACAGACcuGCGcCGUCACCGGCu -3'
miRNA:   3'- agaCCAUGUUUG--CGUuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 184484 0.68 0.976652
Target:  5'- gCUGGUGu--GCGCccuGCGCgGCCGcGCc -3'
miRNA:   3'- aGACCAUguuUGCGu--UGCGgUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 184163 0.75 0.733561
Target:  5'- cCUGGUgcGCGAGCGgGAgGUgCACCGGCc -3'
miRNA:   3'- aGACCA--UGUUUGCgUUgCG-GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 183441 0.67 0.98491
Target:  5'- -gUGGcGCGAGauCGACGCC-CUGGCg -3'
miRNA:   3'- agACCaUGUUUgcGUUGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 183216 0.71 0.889732
Target:  5'- cCUGGagcGCGAcggcACGCugacucgggguuCGCCGCCGGCg -3'
miRNA:   3'- aGACCa--UGUU----UGCGuu----------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 182976 0.66 0.991863
Target:  5'- gUCUaGcaGCGAcgGCGUucGGCGUCACCGGCc -3'
miRNA:   3'- -AGA-CcaUGUU--UGCG--UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 181439 0.71 0.898866
Target:  5'- -gUGGUcguACAAgugcuGCGCGGCGuCCAgCGGCu -3'
miRNA:   3'- agACCA---UGUU-----UGCGUUGC-GGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 181202 0.67 0.981117
Target:  5'- ----cUGCGAGcCGCGGuCGCCGCCGGg -3'
miRNA:   3'- agaccAUGUUU-GCGUU-GCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 180140 0.66 0.992884
Target:  5'- --aGGUcCAGGaGCAGCGCCACCu-- -3'
miRNA:   3'- agaCCAuGUUUgCGUUGCGGUGGccg -5'
14309 5' -53 NC_003521.1 + 180118 0.7 0.946822
Target:  5'- -gUGGUGCGAccCGCGcCGCCcCCGGg -3'
miRNA:   3'- agACCAUGUUu-GCGUuGCGGuGGCCg -5'
14309 5' -53 NC_003521.1 + 177804 0.81 0.43125
Target:  5'- gCUGGUG--GGCGUcgugGGCGCCGCCGGCu -3'
miRNA:   3'- aGACCAUguUUGCG----UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 177722 0.73 0.806646
Target:  5'- gCUGGUACugcuggaGGGCggGCAGCG-CGCCGGCg -3'
miRNA:   3'- aGACCAUG-------UUUG--CGUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 177576 0.72 0.878764
Target:  5'- aCUcGUcaaaGGugGCGGCGCCGCCGGUu -3'
miRNA:   3'- aGAcCAug--UUugCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 176858 0.71 0.911144
Target:  5'- aUCUGGUuauGGCGCcGCGCCAgCaGCu -3'
miRNA:   3'- -AGACCAuguUUGCGuUGCGGUgGcCG- -5'
14309 5' -53 NC_003521.1 + 176807 0.67 0.986574
Target:  5'- -aUGGUGCGcuC-CAGCGCCugCaGCu -3'
miRNA:   3'- agACCAUGUuuGcGUUGCGGugGcCG- -5'
14309 5' -53 NC_003521.1 + 176044 0.68 0.971177
Target:  5'- --gGGUcuGCAGGCGCuugggauCGCCcggugccgcgccgGCCGGCg -3'
miRNA:   3'- agaCCA--UGUUUGCGuu-----GCGG-------------UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.