miRNA display CGI


Results 61 - 80 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 124162 0.74 0.762181
Target:  5'- gCUGccGUGCAGGCGaUAGCGCCugugcgccuGCCGGCu -3'
miRNA:   3'- aGAC--CAUGUUUGC-GUUGCGG---------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 112393 0.74 0.762181
Target:  5'- cCUGGcu--GGCGCAguGCGCCgACCGGCc -3'
miRNA:   3'- aGACCauguUUGCGU--UGCGG-UGGCCG- -5'
14309 5' -53 NC_003521.1 + 30696 0.73 0.807518
Target:  5'- --aGGcuUAUAacAACGCGGCGCCGCgGGCu -3'
miRNA:   3'- agaCC--AUGU--UUGCGUUGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 46809 0.73 0.807518
Target:  5'- gUCUGGau--GACGC--CGCCGCCGGUg -3'
miRNA:   3'- -AGACCauguUUGCGuuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 129212 0.73 0.807518
Target:  5'- gUCUGGcGCGugguGgGCAguccgGCGCCGCUGGCc -3'
miRNA:   3'- -AGACCaUGUu---UgCGU-----UGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 104929 0.73 0.807518
Target:  5'- -aUGacgACGAGCGCGACGCCGUCGGUu -3'
miRNA:   3'- agACca-UGUUUGCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 153369 0.73 0.814439
Target:  5'- uUCUGGUGCcGgcacagcccgucguaGCGCaggAucuccucgugcagguGCGCCACCGGCg -3'
miRNA:   3'- -AGACCAUGuU---------------UGCG---U---------------UGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 81039 0.73 0.816154
Target:  5'- gUCUGGUugAuguuGACGCAcuGCGCCAaccCCaGCa -3'
miRNA:   3'- -AGACCAugU----UUGCGU--UGCGGU---GGcCG- -5'
14309 5' -53 NC_003521.1 + 130004 0.73 0.816154
Target:  5'- --cGGcgGCGGcGCGCAACgGCCGCUGGCu -3'
miRNA:   3'- agaCCa-UGUU-UGCGUUG-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 136540 0.73 0.816154
Target:  5'- aUCUGGccuUugAGGCGCGcuuCGCCGCCgacuGGCa -3'
miRNA:   3'- -AGACC---AugUUUGCGUu--GCGGUGG----CCG- -5'
14309 5' -53 NC_003521.1 + 192090 0.73 0.807518
Target:  5'- gCUuGUGC---UGCAGCGUCGCCGGCg -3'
miRNA:   3'- aGAcCAUGuuuGCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 89288 0.74 0.798728
Target:  5'- -aUGGUACAAccCGCGuccGCGCCGCCucuGGCc -3'
miRNA:   3'- agACCAUGUUu-GCGU---UGCGGUGG---CCG- -5'
14309 5' -53 NC_003521.1 + 66754 0.74 0.771508
Target:  5'- aCUGGacgACAuccCGCGggugAUGCCGCCGGCc -3'
miRNA:   3'- aGACCa--UGUuu-GCGU----UGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 228981 0.74 0.771508
Target:  5'- --aGGUGCGcGgGCGGCGCaggACCGGCa -3'
miRNA:   3'- agaCCAUGUuUgCGUUGCGg--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 148557 0.74 0.771508
Target:  5'- --cGGUuuGAACGCGucgACGCgACCGGCc -3'
miRNA:   3'- agaCCAugUUUGCGU---UGCGgUGGCCG- -5'
14309 5' -53 NC_003521.1 + 88996 0.74 0.780714
Target:  5'- gUCaGGUACAgaAAUGCcGCGggccCCACCGGCg -3'
miRNA:   3'- -AGaCCAUGU--UUGCGuUGC----GGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 200033 0.74 0.78979
Target:  5'- gCUGGcagaGCcuguGACGCAACGCugccuCACCGGCu -3'
miRNA:   3'- aGACCa---UGu---UUGCGUUGCG-----GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 220526 0.74 0.78979
Target:  5'- cCUGGUGC---UGCAugG-CGCCGGCg -3'
miRNA:   3'- aGACCAUGuuuGCGUugCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 73190 0.74 0.798728
Target:  5'- gCUGGccgGCAucGACGUgaccgaccccgAGCGCCugCGGCg -3'
miRNA:   3'- aGACCa--UGU--UUGCG-----------UUGCGGugGCCG- -5'
14309 5' -53 NC_003521.1 + 58424 0.74 0.798728
Target:  5'- --cGGUugACGAAgcCGCAGCGCUGCCGGg -3'
miRNA:   3'- agaCCA--UGUUU--GCGUUGCGGUGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.