Results 101 - 120 of 560 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14309 | 5' | -53 | NC_003521.1 | + | 137689 | 0.72 | 0.864284 |
Target: 5'- cCUGGUGC---UGCAGCaCCGCCGcGCg -3' miRNA: 3'- aGACCAUGuuuGCGUUGcGGUGGC-CG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 141298 | 0.72 | 0.864284 |
Target: 5'- --aGGUGCAggUGCGggcgGCGCC-CCGGa -3' miRNA: 3'- agaCCAUGUuuGCGU----UGCGGuGGCCg -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 149177 | 0.72 | 0.864284 |
Target: 5'- gUCUcGGc----GCGCGuCGCCACCGGCg -3' miRNA: 3'- -AGA-CCauguuUGCGUuGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 131064 | 0.72 | 0.864284 |
Target: 5'- cUCUGGacGCGGugGCGGCGaCCG-CGGCu -3' miRNA: 3'- -AGACCa-UGUUugCGUUGC-GGUgGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 150557 | 0.72 | 0.864284 |
Target: 5'- -gUGGUGCGggugGugGCGGCGgCGgCGGCg -3' miRNA: 3'- agACCAUGU----UugCGUUGCgGUgGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 53397 | 0.73 | 0.841051 |
Target: 5'- uUCUGcagcuccuUGCGGGCGUcgGGCGCCACCGaGCa -3' miRNA: 3'- -AGACc-------AUGUUUGCG--UUGCGGUGGC-CG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 221699 | 0.73 | 0.841051 |
Target: 5'- aCUGGUACAccGGCGgccCGCCACCcGCg -3' miRNA: 3'- aGACCAUGU--UUGCguuGCGGUGGcCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 30696 | 0.73 | 0.807518 |
Target: 5'- --aGGcuUAUAacAACGCGGCGCCGCgGGCu -3' miRNA: 3'- agaCC--AUGU--UUGCGUUGCGGUGgCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 46809 | 0.73 | 0.807518 |
Target: 5'- gUCUGGau--GACGC--CGCCGCCGGUg -3' miRNA: 3'- -AGACCauguUUGCGuuGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 129212 | 0.73 | 0.807518 |
Target: 5'- gUCUGGcGCGugguGgGCAguccgGCGCCGCUGGCc -3' miRNA: 3'- -AGACCaUGUu---UgCGU-----UGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 104929 | 0.73 | 0.807518 |
Target: 5'- -aUGacgACGAGCGCGACGCCGUCGGUu -3' miRNA: 3'- agACca-UGUUUGCGUUGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 153369 | 0.73 | 0.814439 |
Target: 5'- uUCUGGUGCcGgcacagcccgucguaGCGCaggAucuccucgugcagguGCGCCACCGGCg -3' miRNA: 3'- -AGACCAUGuU---------------UGCG---U---------------UGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 81039 | 0.73 | 0.816154 |
Target: 5'- gUCUGGUugAuguuGACGCAcuGCGCCAaccCCaGCa -3' miRNA: 3'- -AGACCAugU----UUGCGU--UGCGGU---GGcCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 130004 | 0.73 | 0.816154 |
Target: 5'- --cGGcgGCGGcGCGCAACgGCCGCUGGCu -3' miRNA: 3'- agaCCa-UGUU-UGCGUUG-CGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 136540 | 0.73 | 0.816154 |
Target: 5'- aUCUGGccuUugAGGCGCGcuuCGCCGCCgacuGGCa -3' miRNA: 3'- -AGACC---AugUUUGCGUu--GCGGUGG----CCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 51129 | 0.73 | 0.821257 |
Target: 5'- gCUGGUugagacagcACGAGCGCAGCGacgacagguaaaACCGGCu -3' miRNA: 3'- aGACCA---------UGUUUGCGUUGCgg----------UGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 32861 | 0.73 | 0.824626 |
Target: 5'- gUCUGGagGCcgaucgguuuGGCGCccGCGCCGCCGGUg -3' miRNA: 3'- -AGACCa-UGu---------UUGCGu-UGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 63958 | 0.73 | 0.830456 |
Target: 5'- -gUGGaGCugcuGGCGCGGCGCCauaaccagauccugGCCGGCu -3' miRNA: 3'- agACCaUGu---UUGCGUUGCGG--------------UGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 168078 | 0.73 | 0.832928 |
Target: 5'- --aGGUA-GAGCGCGGCaCCACCGGUc -3' miRNA: 3'- agaCCAUgUUUGCGUUGcGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 41997 | 0.73 | 0.836199 |
Target: 5'- --aGGUcGCAGcagcaacacggcggcACGacaGACGCCGCCGGCa -3' miRNA: 3'- agaCCA-UGUU---------------UGCg--UUGCGGUGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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