miRNA display CGI


Results 121 - 140 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 79624 0.72 0.885684
Target:  5'- --cGGgGCGAcCGCGGCGCC-UCGGCg -3'
miRNA:   3'- agaCCaUGUUuGCGUUGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 17078 0.71 0.892386
Target:  5'- gCUGGcgGCGAcccACGUuccCGCCACCGGa -3'
miRNA:   3'- aGACCa-UGUU---UGCGuu-GCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 115473 0.72 0.864284
Target:  5'- -gUGGUGCAGGgaCAGCGUC-CCGGCg -3'
miRNA:   3'- agACCAUGUUUgcGUUGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 111161 0.72 0.856736
Target:  5'- --cGGUccGCAuAGCGCGGcCGCC-CCGGCg -3'
miRNA:   3'- agaCCA--UGU-UUGCGUU-GCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 234292 0.72 0.856736
Target:  5'- cCUGGgGCgGGACGCAGaccgcccuCGUCACCGGUg -3'
miRNA:   3'- aGACCaUG-UUUGCGUU--------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 130004 0.73 0.816154
Target:  5'- --cGGcgGCGGcGCGCAACgGCCGCUGGCu -3'
miRNA:   3'- agaCCa-UGUU-UGCGUUG-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 136540 0.73 0.816154
Target:  5'- aUCUGGccuUugAGGCGCGcuuCGCCGCCgacuGGCa -3'
miRNA:   3'- -AGACC---AugUUUGCGUu--GCGGUGG----CCG- -5'
14309 5' -53 NC_003521.1 + 51129 0.73 0.821257
Target:  5'- gCUGGUugagacagcACGAGCGCAGCGacgacagguaaaACCGGCu -3'
miRNA:   3'- aGACCA---------UGUUUGCGUUGCgg----------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 32861 0.73 0.824626
Target:  5'- gUCUGGagGCcgaucgguuuGGCGCccGCGCCGCCGGUg -3'
miRNA:   3'- -AGACCa-UGu---------UUGCGu-UGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 63958 0.73 0.830456
Target:  5'- -gUGGaGCugcuGGCGCGGCGCCauaaccagauccugGCCGGCu -3'
miRNA:   3'- agACCaUGu---UUGCGUUGCGG--------------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 168078 0.73 0.832928
Target:  5'- --aGGUA-GAGCGCGGCaCCACCGGUc -3'
miRNA:   3'- agaCCAUgUUUGCGUUGcGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 41997 0.73 0.836199
Target:  5'- --aGGUcGCAGcagcaacacggcggcACGacaGACGCCGCCGGCa -3'
miRNA:   3'- agaCCA-UGUU---------------UGCg--UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 59154 0.71 0.892386
Target:  5'- gCUGGUGgauCAGcuGCgGCAcgGCGCCGCgGGCa -3'
miRNA:   3'- aGACCAU---GUU--UG-CGU--UGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 221699 0.73 0.841051
Target:  5'- aCUGGUACAccGGCGgccCGCCACCcGCg -3'
miRNA:   3'- aGACCAUGU--UUGCguuGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 53397 0.73 0.841051
Target:  5'- uUCUGcagcuccuUGCGGGCGUcgGGCGCCACCGaGCa -3'
miRNA:   3'- -AGACc-------AUGUUUGCG--UUGCGGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 55010 0.73 0.84899
Target:  5'- --aGGgcuuaAGGCGCAGCGCCAgcgUCGGCg -3'
miRNA:   3'- agaCCaug--UUUGCGUUGCGGU---GGCCG- -5'
14309 5' -53 NC_003521.1 + 149621 0.73 0.84899
Target:  5'- -----cGCGAaacgGCGCugGACGCCGCCGGCg -3'
miRNA:   3'- agaccaUGUU----UGCG--UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 150959 0.73 0.84899
Target:  5'- ---cGUGCAGucGCGCGACGCggCGCUGGCg -3'
miRNA:   3'- agacCAUGUU--UGCGUUGCG--GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 240467 0.73 0.84899
Target:  5'- --cGGUcGCAGGCGC--CGCCuCCGGCa -3'
miRNA:   3'- agaCCA-UGUUUGCGuuGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 99607 0.72 0.856736
Target:  5'- gUUGGUgaccuGCAGcgcccggcgGCGCAGCGCCA-CGGCc -3'
miRNA:   3'- aGACCA-----UGUU---------UGCGUUGCGGUgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.