miRNA display CGI


Results 61 - 80 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 11449 0.74 0.78979
Target:  5'- cUUUGGgccACGAACgacguguacaaGCGACGUCACUGGCa -3'
miRNA:   3'- -AGACCa--UGUUUG-----------CGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 106886 0.73 0.816154
Target:  5'- --cGGUAguAgcgGCGCAGCGCCACCaGGa -3'
miRNA:   3'- agaCCAUguU---UGCGUUGCGGUGG-CCg -5'
14309 5' -53 NC_003521.1 + 44087 0.79 0.502058
Target:  5'- --cGGUGCAGGCGCcgccgccaccaccguCGCCGCCGGUg -3'
miRNA:   3'- agaCCAUGUUUGCGuu-------------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 101234 0.79 0.533943
Target:  5'- cCUGGUGC---CGCGGCGCCA-CGGCa -3'
miRNA:   3'- aGACCAUGuuuGCGUUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 203326 0.77 0.602601
Target:  5'- aUCUGGUACAgcGugGCGAUGggggugcCCugCGGCa -3'
miRNA:   3'- -AGACCAUGU--UugCGUUGC-------GGugGCCG- -5'
14309 5' -53 NC_003521.1 + 1438 0.77 0.64401
Target:  5'- aCUGGgccGCGAGCu--GCGCCGCCGGUg -3'
miRNA:   3'- aGACCa--UGUUUGcguUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 97745 0.76 0.694239
Target:  5'- --cGGcUGCGAauccgACGUAuCGCCACCGGCg -3'
miRNA:   3'- agaCC-AUGUU-----UGCGUuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 97906 0.75 0.723837
Target:  5'- gCUGcUGC-AACGcCGACGUCGCCGGCu -3'
miRNA:   3'- aGACcAUGuUUGC-GUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 108827 0.75 0.733561
Target:  5'- aUCUGGUACGAauuGCGCAGCuCCAgCuGCg -3'
miRNA:   3'- -AGACCAUGUU---UGCGUUGcGGUgGcCG- -5'
14309 5' -53 NC_003521.1 + 58931 0.74 0.771508
Target:  5'- cCUGGUAUAccACG-AACGUCAUCGGCg -3'
miRNA:   3'- aGACCAUGUu-UGCgUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 104257 0.7 0.92783
Target:  5'- --aGGUGCAGcgGCAGCuGCCAgUCGGCg -3'
miRNA:   3'- agaCCAUGUUugCGUUG-CGGU-GGCCG- -5'
14309 5' -53 NC_003521.1 + 126786 0.7 0.922501
Target:  5'- gCUGGUcgaggaggaGAGCGCGACgGUCAUCGGUa -3'
miRNA:   3'- aGACCAug-------UUUGCGUUG-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 110458 0.73 0.816154
Target:  5'- -gUGGcGCuGAGCGCGcacgGCGCCugCGGCc -3'
miRNA:   3'- agACCaUG-UUUGCGU----UGCGGugGCCG- -5'
14309 5' -53 NC_003521.1 + 197660 0.73 0.84899
Target:  5'- gCUcGUGCGGcaGCAGCGCCACCaGCg -3'
miRNA:   3'- aGAcCAUGUUugCGUUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 2472 0.72 0.856736
Target:  5'- -aUGGgu---ACGCGACGgCGCCGGCc -3'
miRNA:   3'- agACCauguuUGCGUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 17978 0.72 0.864284
Target:  5'- -gUGGUGCGAguACGUGuauCGCCACCcGCa -3'
miRNA:   3'- agACCAUGUU--UGCGUu--GCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 177576 0.72 0.878764
Target:  5'- aCUcGUcaaaGGugGCGGCGCCGCCGGUu -3'
miRNA:   3'- aGAcCAug--UUugCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 183216 0.71 0.889732
Target:  5'- cCUGGagcGCGAcggcACGCugacucgggguuCGCCGCCGGCg -3'
miRNA:   3'- aGACCa--UGUU----UGCGuu----------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 196859 0.71 0.898866
Target:  5'- cUCUGcGUcaGCAugucgaGCAGCaGCCGCCGGUg -3'
miRNA:   3'- -AGAC-CA--UGUuug---CGUUG-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 110522 0.71 0.905119
Target:  5'- cCUGG-AU--GCGCGGCGCCG-CGGCc -3'
miRNA:   3'- aGACCaUGuuUGCGUUGCGGUgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.