miRNA display CGI


Results 81 - 100 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 49728 0.73 0.841051
Target:  5'- aCUGGUggACgAGACGCAGCccGCCGCCGcCa -3'
miRNA:   3'- aGACCA--UG-UUUGCGUUG--CGGUGGCcG- -5'
14309 5' -53 NC_003521.1 + 113345 0.72 0.856736
Target:  5'- aCUGGUGac-GCGCAucuCGgCGCUGGCg -3'
miRNA:   3'- aGACCAUguuUGCGUu--GCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 87150 0.72 0.856736
Target:  5'- gUUGGaGCGGGCGCAguucgugcGCGCgGCCGuGCa -3'
miRNA:   3'- aGACCaUGUUUGCGU--------UGCGgUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 101987 0.72 0.871629
Target:  5'- aUCUGGccGCAGGcCGUAGcCGCCGCCaucaGGCg -3'
miRNA:   3'- -AGACCa-UGUUU-GCGUU-GCGGUGG----CCG- -5'
14309 5' -53 NC_003521.1 + 165126 0.72 0.878764
Target:  5'- -gUGGUGCGGACGgGggcuggaccGCGgUGCCGGCg -3'
miRNA:   3'- agACCAUGUUUGCgU---------UGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 196859 0.71 0.898866
Target:  5'- cUCUGcGUcaGCAugucgaGCAGCaGCCGCCGGUg -3'
miRNA:   3'- -AGAC-CA--UGUuug---CGUUG-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 110522 0.71 0.905119
Target:  5'- cCUGG-AU--GCGCGGCGCCG-CGGCc -3'
miRNA:   3'- aGACCaUGuuUGCGUUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 58931 0.74 0.771508
Target:  5'- cCUGGUAUAccACG-AACGUCAUCGGCg -3'
miRNA:   3'- aGACCAUGUu-UGCgUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 108827 0.75 0.733561
Target:  5'- aUCUGGUACGAauuGCGCAGCuCCAgCuGCg -3'
miRNA:   3'- -AGACCAUGUU---UGCGUUGcGGUgGcCG- -5'
14309 5' -53 NC_003521.1 + 97906 0.75 0.723837
Target:  5'- gCUGcUGC-AACGcCGACGUCGCCGGCu -3'
miRNA:   3'- aGACcAUGuUUGC-GUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 116686 0.7 0.937789
Target:  5'- --cGGcgGCGGAgGCAGCGgCGCgGGCg -3'
miRNA:   3'- agaCCa-UGUUUgCGUUGCgGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 15342 0.7 0.942421
Target:  5'- gCUGGUGCA---GCAGuCGCgACUGGUg -3'
miRNA:   3'- aGACCAUGUuugCGUU-GCGgUGGCCG- -5'
14309 5' -53 NC_003521.1 + 214517 0.7 0.942421
Target:  5'- cCUGGaagcGCGgacAGCGCGugGCC-CUGGCc -3'
miRNA:   3'- aGACCa---UGU---UUGCGUugCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 53216 0.7 0.946822
Target:  5'- cUCgccgGGgaguccGCGGGCGaAGCGaCCGCCGGCg -3'
miRNA:   3'- -AGa---CCa-----UGUUUGCgUUGC-GGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 194694 0.7 0.946822
Target:  5'- cUCUGGgacaugccucccUGCGAACGCuGCGuCCGgaGGCg -3'
miRNA:   3'- -AGACC------------AUGUUUGCGuUGC-GGUggCCG- -5'
14309 5' -53 NC_003521.1 + 44087 0.79 0.502058
Target:  5'- --cGGUGCAGGCGCcgccgccaccaccguCGCCGCCGGUg -3'
miRNA:   3'- agaCCAUGUUUGCGuu-------------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 101234 0.79 0.533943
Target:  5'- cCUGGUGC---CGCGGCGCCA-CGGCa -3'
miRNA:   3'- aGACCAUGuuuGCGUUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 203326 0.77 0.602601
Target:  5'- aUCUGGUACAgcGugGCGAUGggggugcCCugCGGCa -3'
miRNA:   3'- -AGACCAUGU--UugCGUUGC-------GGugGCCG- -5'
14309 5' -53 NC_003521.1 + 1438 0.77 0.64401
Target:  5'- aCUGGgccGCGAGCu--GCGCCGCCGGUg -3'
miRNA:   3'- aGACCa--UGUUUGcguUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 97745 0.76 0.694239
Target:  5'- --cGGcUGCGAauccgACGUAuCGCCACCGGCg -3'
miRNA:   3'- agaCC-AUGUU-----UGCGUuGCGGUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.