miRNA display CGI


Results 101 - 120 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 161992 0.7 0.945526
Target:  5'- gCUGGUGCuc-CGUcaaccguuacgacuGGCGCCACCagGGCc -3'
miRNA:   3'- aGACCAUGuuuGCG--------------UUGCGGUGG--CCG- -5'
14309 5' -53 NC_003521.1 + 119778 0.7 0.948519
Target:  5'- cCUGGgACcGGCGCAgcggcgacgaggucgGCGCCGCCGa- -3'
miRNA:   3'- aGACCaUGuUUGCGU---------------UGCGGUGGCcg -5'
14309 5' -53 NC_003521.1 + 33846 0.69 0.95456
Target:  5'- cCUGGggcguCAuuCGCuucguggAACGCCACgGGCu -3'
miRNA:   3'- aGACCau---GUuuGCG-------UUGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 212095 0.69 0.954945
Target:  5'- gUCUGGUugucGGCGU-GCGCCACCaucuGGCg -3'
miRNA:   3'- -AGACCAugu-UUGCGuUGCGGUGG----CCG- -5'
14309 5' -53 NC_003521.1 + 123575 0.69 0.958672
Target:  5'- -gUGGcGgGAugGCGGCGgCGCCGGg -3'
miRNA:   3'- agACCaUgUUugCGUUGCgGUGGCCg -5'
14309 5' -53 NC_003521.1 + 101987 0.72 0.871629
Target:  5'- aUCUGGccGCAGGcCGUAGcCGCCGCCaucaGGCg -3'
miRNA:   3'- -AGACCa-UGUUU-GCGUU-GCGGUGG----CCG- -5'
14309 5' -53 NC_003521.1 + 87150 0.72 0.856736
Target:  5'- gUUGGaGCGGGCGCAguucgugcGCGCgGCCGuGCa -3'
miRNA:   3'- aGACCaUGUUUGCGU--------UGCGgUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 44087 0.79 0.502058
Target:  5'- --cGGUGCAGGCGCcgccgccaccaccguCGCCGCCGGUg -3'
miRNA:   3'- agaCCAUGUUUGCGuu-------------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 101234 0.79 0.533943
Target:  5'- cCUGGUGC---CGCGGCGCCA-CGGCa -3'
miRNA:   3'- aGACCAUGuuuGCGUUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 203326 0.77 0.602601
Target:  5'- aUCUGGUACAgcGugGCGAUGggggugcCCugCGGCa -3'
miRNA:   3'- -AGACCAUGU--UugCGUUGC-------GGugGCCG- -5'
14309 5' -53 NC_003521.1 + 1438 0.77 0.64401
Target:  5'- aCUGGgccGCGAGCu--GCGCCGCCGGUg -3'
miRNA:   3'- aGACCa--UGUUUGcguUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 97745 0.76 0.694239
Target:  5'- --cGGcUGCGAauccgACGUAuCGCCACCGGCg -3'
miRNA:   3'- agaCC-AUGUU-----UGCGUuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 97906 0.75 0.723837
Target:  5'- gCUGcUGC-AACGcCGACGUCGCCGGCu -3'
miRNA:   3'- aGACcAUGuUUGC-GUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 108827 0.75 0.733561
Target:  5'- aUCUGGUACGAauuGCGCAGCuCCAgCuGCg -3'
miRNA:   3'- -AGACCAUGUU---UGCGUUGcGGUgGcCG- -5'
14309 5' -53 NC_003521.1 + 58931 0.74 0.771508
Target:  5'- cCUGGUAUAccACG-AACGUCAUCGGCg -3'
miRNA:   3'- aGACCAUGUu-UGCgUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 15233 0.74 0.798728
Target:  5'- --cGGc-CGAGCGCGAgGCCGCCGaGCg -3'
miRNA:   3'- agaCCauGUUUGCGUUgCGGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 117383 0.73 0.807518
Target:  5'- --cGGUGCAggUGCGgcacGCGCUguGCUGGCa -3'
miRNA:   3'- agaCCAUGUuuGCGU----UGCGG--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 141193 0.73 0.816154
Target:  5'- uUCgcgGGUgGCcguGGCGCuGCGCCGCCGGg -3'
miRNA:   3'- -AGa--CCA-UGu--UUGCGuUGCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 49728 0.73 0.841051
Target:  5'- aCUGGUggACgAGACGCAGCccGCCGCCGcCa -3'
miRNA:   3'- aGACCA--UG-UUUGCGUUG--CGGUGGCcG- -5'
14309 5' -53 NC_003521.1 + 113345 0.72 0.856736
Target:  5'- aCUGGUGac-GCGCAucuCGgCGCUGGCg -3'
miRNA:   3'- aGACCAUguuUGCGUu--GCgGUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.