miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1431 3' -52.2 NC_001335.1 + 11097 0.66 0.868032
Target:  5'- uCGGGcGUUugUCGAGAUCCUCGAagGCa -3'
miRNA:   3'- cGCUCcCAG--AGCUCUAGGAGUUgaUG- -5'
1431 3' -52.2 NC_001335.1 + 16034 0.66 0.859731
Target:  5'- -aGGGaGGUCUCcucgGAGGucUCCUCGGCgGCa -3'
miRNA:   3'- cgCUC-CCAGAG----CUCU--AGGAGUUGaUG- -5'
1431 3' -52.2 NC_001335.1 + 2279 0.66 0.859731
Target:  5'- uUGAGGaUCUCGAGAcCCUCGccACcGCc -3'
miRNA:   3'- cGCUCCcAGAGCUCUaGGAGU--UGaUG- -5'
1431 3' -52.2 NC_001335.1 + 32920 0.66 0.842395
Target:  5'- gGCGAcGGUgaCGAcGG-CCUCGGCUGCu -3'
miRNA:   3'- -CGCUcCCAgaGCU-CUaGGAGUUGAUG- -5'
1431 3' -52.2 NC_001335.1 + 41574 0.67 0.805032
Target:  5'- cCGAGGGUCggcggGGGAUCC---GCUACc -3'
miRNA:   3'- cGCUCCCAGag---CUCUAGGaguUGAUG- -5'
1431 3' -52.2 NC_001335.1 + 37180 0.67 0.805032
Target:  5'- gGCGAGGcccCUUGGGAuaccgcucgUCCUCGgggaGCUGCa -3'
miRNA:   3'- -CGCUCCca-GAGCUCU---------AGGAGU----UGAUG- -5'
1431 3' -52.2 NC_001335.1 + 45511 0.67 0.795191
Target:  5'- gGCGAagacguaGGUCUCGAGcacGUCCUCGuACUcgACg -3'
miRNA:   3'- -CGCUc------CCAGAGCUC---UAGGAGU-UGA--UG- -5'
1431 3' -52.2 NC_001335.1 + 2230 0.69 0.721992
Target:  5'- nCGAGGGUCcagggaccgUCGAGGUCUcCGACg-- -3'
miRNA:   3'- cGCUCCCAG---------AGCUCUAGGaGUUGaug -5'
1431 3' -52.2 NC_001335.1 + 7291 0.7 0.655447
Target:  5'- cGCG-GGG-CUCGAGGUcgcugCCUCAauacggccaccgGCUGCg -3'
miRNA:   3'- -CGCuCCCaGAGCUCUA-----GGAGU------------UGAUG- -5'
1431 3' -52.2 NC_001335.1 + 42508 0.71 0.609351
Target:  5'- cGCGcuggauacaAGGGUCgggCGAccaugaaGAUCCUCAaGCUGCg -3'
miRNA:   3'- -CGC---------UCCCAGa--GCU-------CUAGGAGU-UGAUG- -5'
1431 3' -52.2 NC_001335.1 + 2205 1.13 0.001128
Target:  5'- gGCGAGGGUCUCGAGAUCCUCAACUACg -3'
miRNA:   3'- -CGCUCCCAGAGCUCUAGGAGUUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.