miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14311 5' -53.6 NC_003521.1 + 152944 0.66 0.984305
Target:  5'- aUCcACUUCGCCaacgGcCUGGCCAGcGCCu -3'
miRNA:   3'- aAGuUGGAGUGGca--C-GACCGGUU-UGG- -5'
14311 5' -53.6 NC_003521.1 + 170506 0.66 0.984305
Target:  5'- -aCGGCgUCACCGccucgcUGCUGGgCGAccugcACCg -3'
miRNA:   3'- aaGUUGgAGUGGC------ACGACCgGUU-----UGG- -5'
14311 5' -53.6 NC_003521.1 + 187916 0.66 0.984305
Target:  5'- gUCGAUgaCGaCGUGCgucuugaauggUGGCCAAACCu -3'
miRNA:   3'- aAGUUGgaGUgGCACG-----------ACCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 191551 0.66 0.984123
Target:  5'- gUCAACUgcuaCGUGCgGGCCAuccuagaGGCCg -3'
miRNA:   3'- aAGUUGGagugGCACGaCCGGU-------UUGG- -5'
14311 5' -53.6 NC_003521.1 + 27092 0.66 0.984123
Target:  5'- -aCGGCCUucugcggCGCCGU-CUGGCUggGCa -3'
miRNA:   3'- aaGUUGGA-------GUGGCAcGACCGGuuUGg -5'
14311 5' -53.6 NC_003521.1 + 214267 0.66 0.982413
Target:  5'- aUCGcCCUgaCGCCGUcGCUGGCauaAAGCg -3'
miRNA:   3'- aAGUuGGA--GUGGCA-CGACCGg--UUUGg -5'
14311 5' -53.6 NC_003521.1 + 155275 0.66 0.982413
Target:  5'- ---cGCCUCAggcCCGUcGCUGGgCAAcGCCa -3'
miRNA:   3'- aaguUGGAGU---GGCA-CGACCgGUU-UGG- -5'
14311 5' -53.6 NC_003521.1 + 88266 0.66 0.982413
Target:  5'- -cCAGCUUgACCGagUGCUGGCUgucgugcacGAACUg -3'
miRNA:   3'- aaGUUGGAgUGGC--ACGACCGG---------UUUGG- -5'
14311 5' -53.6 NC_003521.1 + 154561 0.66 0.982413
Target:  5'- -cCAACUUCGCCucGCcGGCCGAcuucGCCc -3'
miRNA:   3'- aaGUUGGAGUGGcaCGaCCGGUU----UGG- -5'
14311 5' -53.6 NC_003521.1 + 186306 0.66 0.982413
Target:  5'- -cCAGCggCGCCGUGCagauccUGGuCCAcGCCg -3'
miRNA:   3'- aaGUUGgaGUGGCACG------ACC-GGUuUGG- -5'
14311 5' -53.6 NC_003521.1 + 118314 0.66 0.982413
Target:  5'- -cCGGCCUgcccgcCGCCGcGUUGGCCcugcaGAACCc -3'
miRNA:   3'- aaGUUGGA------GUGGCaCGACCGG-----UUUGG- -5'
14311 5' -53.6 NC_003521.1 + 50279 0.66 0.982413
Target:  5'- -gCAGCCgggucCGCCGcUGCUGccGCCGcACCu -3'
miRNA:   3'- aaGUUGGa----GUGGC-ACGAC--CGGUuUGG- -5'
14311 5' -53.6 NC_003521.1 + 22400 0.66 0.982413
Target:  5'- ---uGCCgcCGCUGUcGCUGGCCAuGCUg -3'
miRNA:   3'- aaguUGGa-GUGGCA-CGACCGGUuUGG- -5'
14311 5' -53.6 NC_003521.1 + 218408 0.66 0.982215
Target:  5'- cUCGGCCaCGCCGcGCagcaUGGCCAGcgacagcggcggcACCa -3'
miRNA:   3'- aAGUUGGaGUGGCaCG----ACCGGUU-------------UGG- -5'
14311 5' -53.6 NC_003521.1 + 117393 0.66 0.980355
Target:  5'- -gCGGCacgCGCUGUGCUGGC---ACCg -3'
miRNA:   3'- aaGUUGga-GUGGCACGACCGguuUGG- -5'
14311 5' -53.6 NC_003521.1 + 55964 0.66 0.980355
Target:  5'- -gCAGCCcCACCacgccgauGUGCaggGGCCGcAGCCg -3'
miRNA:   3'- aaGUUGGaGUGG--------CACGa--CCGGU-UUGG- -5'
14311 5' -53.6 NC_003521.1 + 73174 0.66 0.980355
Target:  5'- -gCGACCUggaCGCgGaGCUGGCCGgcaucgacguGACCg -3'
miRNA:   3'- aaGUUGGA---GUGgCaCGACCGGU----------UUGG- -5'
14311 5' -53.6 NC_003521.1 + 123373 0.66 0.980355
Target:  5'- -aCAGCCgCACCGacaggcgGCUaGUCAGGCCg -3'
miRNA:   3'- aaGUUGGaGUGGCa------CGAcCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 46418 0.66 0.980355
Target:  5'- cUCGGCCUCcUCGUGCgaggguauccGGCgGGGCUg -3'
miRNA:   3'- aAGUUGGAGuGGCACGa---------CCGgUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 75544 0.66 0.980355
Target:  5'- gUUCAGCggCGCCGgcgGC-GGCUAcGCCa -3'
miRNA:   3'- -AAGUUGgaGUGGCa--CGaCCGGUuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.