miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14315 3' -64.4 NC_003521.1 + 38668 0.66 0.714256
Target:  5'- cCGcgUCCUGCGGuCUGgCUCGGCgccauCCCCg -3'
miRNA:   3'- -GCaaGGGGCGCC-GGCgGAGCUG-----GGGG- -5'
14315 3' -64.4 NC_003521.1 + 164632 0.66 0.714256
Target:  5'- ---aCCaCCGCGaCCGCCUCccGACCCg- -3'
miRNA:   3'- gcaaGG-GGCGCcGGCGGAG--CUGGGgg -5'
14315 3' -64.4 NC_003521.1 + 67172 0.66 0.714256
Target:  5'- uGggUCCCGCGcaGCCGCC-CGAagccaacaCCCUg -3'
miRNA:   3'- gCaaGGGGCGC--CGGCGGaGCUg-------GGGG- -5'
14315 3' -64.4 NC_003521.1 + 149797 0.66 0.714256
Target:  5'- gCGUUCCgCGaaCGGCCgGCCgugacCGACCUgCu -3'
miRNA:   3'- -GCAAGGgGC--GCCGG-CGGa----GCUGGGgG- -5'
14315 3' -64.4 NC_003521.1 + 233166 0.66 0.714256
Target:  5'- cCGcUgUCCGC-GCCGCCguggCGGCCgCCg -3'
miRNA:   3'- -GCaAgGGGCGcCGGCGGa---GCUGGgGG- -5'
14315 3' -64.4 NC_003521.1 + 116636 0.66 0.714256
Target:  5'- aGUUCCUCaGCGGCaGCUacgcCGGCCUCUc -3'
miRNA:   3'- gCAAGGGG-CGCCGgCGGa---GCUGGGGG- -5'
14315 3' -64.4 NC_003521.1 + 238895 0.66 0.714256
Target:  5'- cCGcgUCCUGCGGuCUGgCUCGGCgccauCCCCg -3'
miRNA:   3'- -GCaaGGGGCGCC-GGCgGAGCUG-----GGGG- -5'
14315 3' -64.4 NC_003521.1 + 202569 0.66 0.714256
Target:  5'- aCGUcgUCUCCGCugagaucaccGGCUcaaugcucuCCUCGGCCCCUa -3'
miRNA:   3'- -GCA--AGGGGCG----------CCGGc--------GGAGCUGGGGG- -5'
14315 3' -64.4 NC_003521.1 + 27073 0.66 0.714256
Target:  5'- -cUUCUaCGUGGCCGCCaccaCGGCCUUCu -3'
miRNA:   3'- gcAAGGgGCGCCGGCGGa---GCUGGGGG- -5'
14315 3' -64.4 NC_003521.1 + 139692 0.66 0.714256
Target:  5'- gCGcUUUCCGCGuGcCCGCCgaccCG-CCCCCu -3'
miRNA:   3'- -GCaAGGGGCGC-C-GGCGGa---GCuGGGGG- -5'
14315 3' -64.4 NC_003521.1 + 24571 0.66 0.714256
Target:  5'- ---aCUCgGCGGCCuCCUCGuccACCuCCCg -3'
miRNA:   3'- gcaaGGGgCGCCGGcGGAGC---UGG-GGG- -5'
14315 3' -64.4 NC_003521.1 + 68709 0.66 0.714256
Target:  5'- --cUCaugaCCGUGG-CGCCgUCGGCCgCCCg -3'
miRNA:   3'- gcaAGg---GGCGCCgGCGG-AGCUGG-GGG- -5'
14315 3' -64.4 NC_003521.1 + 92179 0.66 0.714256
Target:  5'- --aUCCCCGCcgagcucggGGCCGUuuUUCG-CCgCCCg -3'
miRNA:   3'- gcaAGGGGCG---------CCGGCG--GAGCuGG-GGG- -5'
14315 3' -64.4 NC_003521.1 + 143305 0.66 0.705225
Target:  5'- uCGUcucUCUCCGUGGUCGCCcgCGguagagacaGCCgCCa -3'
miRNA:   3'- -GCA---AGGGGCGCCGGCGGa-GC---------UGGgGG- -5'
14315 3' -64.4 NC_003521.1 + 137302 0.66 0.705225
Target:  5'- gCGggUggCGCGGCUGCUgcgcggCGACCCCg -3'
miRNA:   3'- -GCaaGggGCGCCGGCGGa-----GCUGGGGg -5'
14315 3' -64.4 NC_003521.1 + 154124 0.66 0.705225
Target:  5'- ---gCCUCGuCGucGCCGCCgCGGCCCgCCa -3'
miRNA:   3'- gcaaGGGGC-GC--CGGCGGaGCUGGG-GG- -5'
14315 3' -64.4 NC_003521.1 + 124138 0.66 0.705225
Target:  5'- ----gCCCGCGccGCUGCCUCcGCCgCCg -3'
miRNA:   3'- gcaagGGGCGC--CGGCGGAGcUGGgGG- -5'
14315 3' -64.4 NC_003521.1 + 136140 0.66 0.705225
Target:  5'- ---aCCCCGUGGCgCGCCgCcACCaCCUg -3'
miRNA:   3'- gcaaGGGGCGCCG-GCGGaGcUGG-GGG- -5'
14315 3' -64.4 NC_003521.1 + 184836 0.66 0.705225
Target:  5'- ---aCgCCGUGGaCCGgCUgCGGCCCCUg -3'
miRNA:   3'- gcaaGgGGCGCC-GGCgGA-GCUGGGGG- -5'
14315 3' -64.4 NC_003521.1 + 4448 0.66 0.704319
Target:  5'- ----gCCCGaGGCgaucugaaggcacCGCCUgCGGCCCCCg -3'
miRNA:   3'- gcaagGGGCgCCG-------------GCGGA-GCUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.