miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14315 5' -48 NC_003521.1 + 214553 0.66 0.999983
Target:  5'- aCCAG-CACCGgggugCAgugagCAgCAGGGGCg -3'
miRNA:   3'- -GGUUaGUGGCaua--GUa----GUgGUCCUUG- -5'
14315 5' -48 NC_003521.1 + 83880 0.66 0.999983
Target:  5'- cCCAGUCuuCGggugCAUCugCGGGuGGCg -3'
miRNA:   3'- -GGUUAGugGCaua-GUAGugGUCC-UUG- -5'
14315 5' -48 NC_003521.1 + 152289 0.66 0.999983
Target:  5'- uCCAGcaCGCCGcgg-AUCAUCAGGGACu -3'
miRNA:   3'- -GGUUa-GUGGCauagUAGUGGUCCUUG- -5'
14315 5' -48 NC_003521.1 + 47011 0.66 0.999983
Target:  5'- gUAAUCAUCGUAcUC--CACCAuGGGGCg -3'
miRNA:   3'- gGUUAGUGGCAU-AGuaGUGGU-CCUUG- -5'
14315 5' -48 NC_003521.1 + 180308 0.66 0.999983
Target:  5'- cCCAGaUGCCGUGcagcUCcUC-CCGGGAGCc -3'
miRNA:   3'- -GGUUaGUGGCAU----AGuAGuGGUCCUUG- -5'
14315 5' -48 NC_003521.1 + 129199 0.66 0.999982
Target:  5'- ---uUCGCCGgcgguucgaccUCGUCGCCGcGGGGCg -3'
miRNA:   3'- gguuAGUGGCau---------AGUAGUGGU-CCUUG- -5'
14315 5' -48 NC_003521.1 + 201947 0.66 0.999977
Target:  5'- cCCGAg---CGUGUCGgcugaUACCGGGAACg -3'
miRNA:   3'- -GGUUagugGCAUAGUa----GUGGUCCUUG- -5'
14315 5' -48 NC_003521.1 + 220109 0.66 0.999977
Target:  5'- aCGAUCAUCacGUCAcgCGCCAGGuuGGCg -3'
miRNA:   3'- gGUUAGUGGcaUAGUa-GUGGUCC--UUG- -5'
14315 5' -48 NC_003521.1 + 174027 0.66 0.999977
Target:  5'- gCCGGUC-CUG---CGUCACCAGcGAACc -3'
miRNA:   3'- -GGUUAGuGGCauaGUAGUGGUC-CUUG- -5'
14315 5' -48 NC_003521.1 + 42431 0.66 0.999977
Target:  5'- ----cCACCGUGagCGUCACCguAGGggUc -3'
miRNA:   3'- gguuaGUGGCAUa-GUAGUGG--UCCuuG- -5'
14315 5' -48 NC_003521.1 + 27311 0.66 0.999977
Target:  5'- gCCAuccUCACCGacuaugugcugGUCAUCACCcuguGGAugGCg -3'
miRNA:   3'- -GGUu--AGUGGCa----------UAGUAGUGGu---CCU--UG- -5'
14315 5' -48 NC_003521.1 + 1720 0.66 0.999977
Target:  5'- cCCGAg---CGUGUCGgcugaUACCGGGAACg -3'
miRNA:   3'- -GGUUagugGCAUAGUa----GUGGUCCUUG- -5'
14315 5' -48 NC_003521.1 + 135421 0.66 0.999968
Target:  5'- aCCAAUCAcCCGgcgcgAUUuggCGCCcgcGGGAACc -3'
miRNA:   3'- -GGUUAGU-GGCa----UAGua-GUGG---UCCUUG- -5'
14315 5' -48 NC_003521.1 + 204360 0.66 0.999968
Target:  5'- uCCGGUCcuUCGUcgCggC-CCAGGAGCg -3'
miRNA:   3'- -GGUUAGu-GGCAuaGuaGuGGUCCUUG- -5'
14315 5' -48 NC_003521.1 + 38407 0.66 0.999968
Target:  5'- cCCAuggguugCGCCuGgcUUuUCACCGGGGGCg -3'
miRNA:   3'- -GGUua-----GUGG-CauAGuAGUGGUCCUUG- -5'
14315 5' -48 NC_003521.1 + 135658 0.66 0.999968
Target:  5'- cCCAgcGUCGgCGgcGUCGUCACCaccucguccugGGGGACc -3'
miRNA:   3'- -GGU--UAGUgGCa-UAGUAGUGG-----------UCCUUG- -5'
14315 5' -48 NC_003521.1 + 184657 0.66 0.999968
Target:  5'- gUCGcgCugCGUGUUcgCGCgCAGcGAGCa -3'
miRNA:   3'- -GGUuaGugGCAUAGuaGUG-GUC-CUUG- -5'
14315 5' -48 NC_003521.1 + 73999 0.66 0.999968
Target:  5'- ---cUCACCG--UCGUCGCCuGGAu- -3'
miRNA:   3'- gguuAGUGGCauAGUAGUGGuCCUug -5'
14315 5' -48 NC_003521.1 + 170490 0.66 0.999968
Target:  5'- gCGAUCGCgaagAUCGUCACgAGGGGa -3'
miRNA:   3'- gGUUAGUGgca-UAGUAGUGgUCCUUg -5'
14315 5' -48 NC_003521.1 + 215144 0.66 0.999968
Target:  5'- aCGAagGCCag--CGUCACCAGGAc- -3'
miRNA:   3'- gGUUagUGGcauaGUAGUGGUCCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.