miRNA display CGI


Results 21 - 40 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14316 3' -56.3 NC_003521.1 + 158824 0.66 0.937792
Target:  5'- --aAGGAGCaGuACcACAcccGCGGCAGCACc -3'
miRNA:   3'- uucUCCUCG-C-UGcUGU---UGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 221998 0.66 0.937792
Target:  5'- uAGGGcauguGCGGCGugGGCGGgaAGCACu -3'
miRNA:   3'- uUCUCcu---CGCUGCugUUGCCg-UCGUG- -5'
14316 3' -56.3 NC_003521.1 + 116261 0.66 0.937792
Target:  5'- uAGAGGAGgaaaCGACGGCAACGaUGGCu- -3'
miRNA:   3'- uUCUCCUC----GCUGCUGUUGCcGUCGug -5'
14316 3' -56.3 NC_003521.1 + 18883 0.66 0.937792
Target:  5'- -uGAGcAGCGACGAgGacgaggcgccGCGGCAGCc- -3'
miRNA:   3'- uuCUCcUCGCUGCUgU----------UGCCGUCGug -5'
14316 3' -56.3 NC_003521.1 + 101490 0.66 0.937792
Target:  5'- -uGAGGuGCu-CGAgCAGCGGCGGC-Ca -3'
miRNA:   3'- uuCUCCuCGcuGCU-GUUGCCGUCGuG- -5'
14316 3' -56.3 NC_003521.1 + 148792 0.66 0.936842
Target:  5'- -cGAGGAGCcGCGGCuGCGGacguucaucguGCGCg -3'
miRNA:   3'- uuCUCCUCGcUGCUGuUGCCgu---------CGUG- -5'
14316 3' -56.3 NC_003521.1 + 195192 0.66 0.932951
Target:  5'- ---cGGAGcCGGCGGCggUGGCcgucugcgucGGCGCu -3'
miRNA:   3'- uucuCCUC-GCUGCUGuuGCCG----------UCGUG- -5'
14316 3' -56.3 NC_003521.1 + 209095 0.66 0.932951
Target:  5'- cGGAGGcGGUGGCcGCGGCGuccCAGCACg -3'
miRNA:   3'- uUCUCC-UCGCUGcUGUUGCc--GUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 55752 0.66 0.932951
Target:  5'- cGGGcGGcAGCGACaGGCGcggcCGGCGGUACa -3'
miRNA:   3'- -UUCuCC-UCGCUG-CUGUu---GCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 66408 0.66 0.932951
Target:  5'- -cGAGGAGCGG-GACAA-GGUAcucuuGCACa -3'
miRNA:   3'- uuCUCCUCGCUgCUGUUgCCGU-----CGUG- -5'
14316 3' -56.3 NC_003521.1 + 105027 0.66 0.932951
Target:  5'- --cGGGAGCGcuuCGAgGACGGCccgcccguGCGCg -3'
miRNA:   3'- uucUCCUCGCu--GCUgUUGCCGu-------CGUG- -5'
14316 3' -56.3 NC_003521.1 + 192313 0.66 0.932951
Target:  5'- ---cGGuAGCGGCGu---CGGCGGCACc -3'
miRNA:   3'- uucuCC-UCGCUGCuguuGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 103648 0.66 0.932951
Target:  5'- cGGGGGcagcucGGCGGCGGCcgcuGCGGCcGCGg -3'
miRNA:   3'- uUCUCC------UCGCUGCUGu---UGCCGuCGUg -5'
14316 3' -56.3 NC_003521.1 + 166833 0.66 0.931453
Target:  5'- -----aGGCGACGACGgugaggauacgcagGCGGUGGCGCg -3'
miRNA:   3'- uucuccUCGCUGCUGU--------------UGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 76048 0.66 0.929935
Target:  5'- cGGAGcGGGCcgccagacgcuugauGACGGCGAUGuGCGGCAg -3'
miRNA:   3'- uUCUC-CUCG---------------CUGCUGUUGC-CGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 214423 0.66 0.929935
Target:  5'- aGAGAcGGcgugGGUGACGGugcugcagaaguugaUGACGGCGGCGCu -3'
miRNA:   3'- -UUCU-CC----UCGCUGCU---------------GUUGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 218605 0.66 0.928396
Target:  5'- aAAGAGGuacgguucggccgccAGCGcGCGGCGGuaagcggccacggcCGGCGGCGCc -3'
miRNA:   3'- -UUCUCC---------------UCGC-UGCUGUU--------------GCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 21946 0.66 0.927878
Target:  5'- cGGGcuGGAGCaGugGGCGagcGCGGCGGgACu -3'
miRNA:   3'- uUCU--CCUCG-CugCUGU---UGCCGUCgUG- -5'
14316 3' -56.3 NC_003521.1 + 54286 0.66 0.927878
Target:  5'- gAAGAGGccguuGCGGCuGGCcACGuagaGCAGCGCg -3'
miRNA:   3'- -UUCUCCu----CGCUG-CUGuUGC----CGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 100430 0.66 0.927878
Target:  5'- aAGGAGGAgGCGACGGgGGCGGagaGGaguCg -3'
miRNA:   3'- -UUCUCCU-CGCUGCUgUUGCCg--UCgu-G- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.