miRNA display CGI


Results 21 - 40 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14316 5' -59.3 NC_003521.1 + 226355 0.66 0.886261
Target:  5'- -cGCGGguagcGCCGCggGaGCGGCGGCUgACg -3'
miRNA:   3'- gcUGCUa----UGGCGa-C-CGCCGCUGGgUG- -5'
14316 5' -59.3 NC_003521.1 + 140126 0.66 0.886261
Target:  5'- -aGCG--GCCGC-GGCGGCGcCuCCGCa -3'
miRNA:   3'- gcUGCuaUGGCGaCCGCCGCuG-GGUG- -5'
14316 5' -59.3 NC_003521.1 + 120227 0.66 0.886261
Target:  5'- aGACGcUACCgGCaGGagcCGGCGGCCgCGCc -3'
miRNA:   3'- gCUGCuAUGG-CGaCC---GCCGCUGG-GUG- -5'
14316 5' -59.3 NC_003521.1 + 44623 0.66 0.886261
Target:  5'- aGACGA-GCCG--GGuCGGCGAUUCGCa -3'
miRNA:   3'- gCUGCUaUGGCgaCC-GCCGCUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 102967 0.66 0.886261
Target:  5'- gGGCGucgggGCU-CUGGCggGGCGGCCCAg -3'
miRNA:   3'- gCUGCua---UGGcGACCG--CCGCUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 66330 0.66 0.886261
Target:  5'- cCGugGAgGCCGcCUGGCaGCaacugGAuCCCGCu -3'
miRNA:   3'- -GCugCUaUGGC-GACCGcCG-----CU-GGGUG- -5'
14316 5' -59.3 NC_003521.1 + 214437 0.66 0.881667
Target:  5'- uGACGGUGCUGCagaaguugaugacGGCGGCGcugaaggagaggaaGgCCACg -3'
miRNA:   3'- gCUGCUAUGGCGa------------CCGCCGC--------------UgGGUG- -5'
14316 5' -59.3 NC_003521.1 + 111158 0.66 0.879668
Target:  5'- gGACGGUccgcauagcgcgGCCGCcccGGCGaCGGCgCCGCg -3'
miRNA:   3'- gCUGCUA------------UGGCGa--CCGCcGCUG-GGUG- -5'
14316 5' -59.3 NC_003521.1 + 16084 0.66 0.879668
Target:  5'- cCGACGcgcugGCCGcCUGcGuCGGCGAgcaCCACg -3'
miRNA:   3'- -GCUGCua---UGGC-GAC-C-GCCGCUg--GGUG- -5'
14316 5' -59.3 NC_003521.1 + 198214 0.66 0.879668
Target:  5'- gCGACGGcGCCGCcGGCGGCcgugguaauaGACUa-- -3'
miRNA:   3'- -GCUGCUaUGGCGaCCGCCG----------CUGGgug -5'
14316 5' -59.3 NC_003521.1 + 5302 0.66 0.879668
Target:  5'- cCGGC-AUGuuUCGCgggGGCGGCGugcCCCGCc -3'
miRNA:   3'- -GCUGcUAU--GGCGa--CCGCCGCu--GGGUG- -5'
14316 5' -59.3 NC_003521.1 + 54558 0.66 0.878998
Target:  5'- uGACG-UugCGCUugacgcgGGUGuGCGGCCCGa -3'
miRNA:   3'- gCUGCuAugGCGA-------CCGC-CGCUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 132683 0.66 0.872879
Target:  5'- aGACGAUcggcucgcGCCcgGCUGGCGG-GACgCgGCa -3'
miRNA:   3'- gCUGCUA--------UGG--CGACCGCCgCUG-GgUG- -5'
14316 5' -59.3 NC_003521.1 + 129548 0.66 0.872879
Target:  5'- gCGGCGG---CGCUGGCacGGCgGGCCCGa -3'
miRNA:   3'- -GCUGCUaugGCGACCG--CCG-CUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 60541 0.66 0.872879
Target:  5'- aGACGGUGCUGCUcaacGUGcGCG-CCUACu -3'
miRNA:   3'- gCUGCUAUGGCGAc---CGC-CGCuGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 239759 0.66 0.872879
Target:  5'- gCGGCGAgagcUGgCGCaGGuCGGUGGCCC-Cg -3'
miRNA:   3'- -GCUGCU----AUgGCGaCC-GCCGCUGGGuG- -5'
14316 5' -59.3 NC_003521.1 + 166240 0.66 0.872879
Target:  5'- gCG-UGAUGCCGCccGGCGaGCGGgCCGu -3'
miRNA:   3'- -GCuGCUAUGGCGa-CCGC-CGCUgGGUg -5'
14316 5' -59.3 NC_003521.1 + 43481 0.66 0.872879
Target:  5'- gCGGCG--GCCguGCUGGCcgcGGCGGCCaACa -3'
miRNA:   3'- -GCUGCuaUGG--CGACCG---CCGCUGGgUG- -5'
14316 5' -59.3 NC_003521.1 + 170528 0.66 0.872878
Target:  5'- gGGCGAccugcACCGCUuucucuucGGCGcCGACCUGCg -3'
miRNA:   3'- gCUGCUa----UGGCGA--------CCGCcGCUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 203339 0.66 0.872878
Target:  5'- uGGCGAUGggggugccCUGC-GGCaccacGGUGGCCCGCg -3'
miRNA:   3'- gCUGCUAU--------GGCGaCCG-----CCGCUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.