miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14318 3' -47.8 NC_003521.1 + 167151 0.66 0.99997
Target:  5'- --cUCGCAGGUgcugauguugauggcGUCaCUGCgGUUACa -3'
miRNA:   3'- caaAGUGUCCAa--------------UAGcGACGgCAAUG- -5'
14318 3' -47.8 NC_003521.1 + 15927 0.66 0.999969
Target:  5'- --cUCGCAGGagAUucUGCUGCUG-UGCg -3'
miRNA:   3'- caaAGUGUCCaaUA--GCGACGGCaAUG- -5'
14318 3' -47.8 NC_003521.1 + 188051 0.66 0.999969
Target:  5'- ----aGCGGGUUGUCGaUGCCGc--- -3'
miRNA:   3'- caaagUGUCCAAUAGCgACGGCaaug -5'
14318 3' -47.8 NC_003521.1 + 179596 0.66 0.999959
Target:  5'- -gUUCuGCAGGcUGcCGCUGCUGcUGCg -3'
miRNA:   3'- caAAG-UGUCCaAUaGCGACGGCaAUG- -5'
14318 3' -47.8 NC_003521.1 + 194809 0.66 0.999927
Target:  5'- -cUUCAC-GGUgc-UGCUgGCCGUUACc -3'
miRNA:   3'- caAAGUGuCCAauaGCGA-CGGCAAUG- -5'
14318 3' -47.8 NC_003521.1 + 25618 0.66 0.999927
Target:  5'- -cUUCACcGGgcuggCGCUGCUGgcGCg -3'
miRNA:   3'- caAAGUGuCCaaua-GCGACGGCaaUG- -5'
14318 3' -47.8 NC_003521.1 + 18686 0.66 0.999904
Target:  5'- --gUCugGGGUU-UCGCcaugGCCGgcGCg -3'
miRNA:   3'- caaAGugUCCAAuAGCGa---CGGCaaUG- -5'
14318 3' -47.8 NC_003521.1 + 89992 0.67 0.999875
Target:  5'- ----gGCGGGUgg-CGCUGCgGggACa -3'
miRNA:   3'- caaagUGUCCAauaGCGACGgCaaUG- -5'
14318 3' -47.8 NC_003521.1 + 193155 0.67 0.999875
Target:  5'- --aUgGCGGGggcGUCugcuGCUGCUGUUGCg -3'
miRNA:   3'- caaAgUGUCCaa-UAG----CGACGGCAAUG- -5'
14318 3' -47.8 NC_003521.1 + 30214 0.67 0.999875
Target:  5'- --aUCACgAGGUcucUAUUGCUGCUGacggGCg -3'
miRNA:   3'- caaAGUG-UCCA---AUAGCGACGGCaa--UG- -5'
14318 3' -47.8 NC_003521.1 + 138016 0.67 0.999839
Target:  5'- --gUCG-AGGUgcgcgugcGUCGCUGCCGgcGCa -3'
miRNA:   3'- caaAGUgUCCAa-------UAGCGACGGCaaUG- -5'
14318 3' -47.8 NC_003521.1 + 123971 0.67 0.999839
Target:  5'- ---gCGCAGGUcGUCGCggucggcgGCCGUc-- -3'
miRNA:   3'- caaaGUGUCCAaUAGCGa-------CGGCAaug -5'
14318 3' -47.8 NC_003521.1 + 115297 0.67 0.999794
Target:  5'- ---aCGCAGGaag-CGCUGCCGa--- -3'
miRNA:   3'- caaaGUGUCCaauaGCGACGGCaaug -5'
14318 3' -47.8 NC_003521.1 + 128010 0.67 0.999794
Target:  5'- --aUC-CGGGggGUCGCgGCCGUc-- -3'
miRNA:   3'- caaAGuGUCCaaUAGCGaCGGCAaug -5'
14318 3' -47.8 NC_003521.1 + 181020 0.67 0.999761
Target:  5'- --gUCGCAccguccaguuaagguGGUaGUCGCgcucGCCGUUACc -3'
miRNA:   3'- caaAGUGU---------------CCAaUAGCGa---CGGCAAUG- -5'
14318 3' -47.8 NC_003521.1 + 166117 0.67 0.999668
Target:  5'- ----aGCAGGgagcCGCUGCCGcgGCg -3'
miRNA:   3'- caaagUGUCCaauaGCGACGGCaaUG- -5'
14318 3' -47.8 NC_003521.1 + 35631 0.68 0.999354
Target:  5'- cGUUUCGCAGGUcccgcacgCGCUGCgaGcgGCa -3'
miRNA:   3'- -CAAAGUGUCCAaua-----GCGACGg-CaaUG- -5'
14318 3' -47.8 NC_003521.1 + 233519 0.68 0.999282
Target:  5'- cGUUUCGCAGGUggguaggUGUCGCguaaucguaggggGCCuagUGCg -3'
miRNA:   3'- -CAAAGUGUCCA-------AUAGCGa------------CGGca-AUG- -5'
14318 3' -47.8 NC_003521.1 + 38294 0.69 0.998811
Target:  5'- uUUUCACGGcaGUUGUUGCagGCCGagGCa -3'
miRNA:   3'- cAAAGUGUC--CAAUAGCGa-CGGCaaUG- -5'
14318 3' -47.8 NC_003521.1 + 196157 0.69 0.998811
Target:  5'- ---gUACAGGUcGUCGCagaGCCgGUUGCa -3'
miRNA:   3'- caaaGUGUCCAaUAGCGa--CGG-CAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.