miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14318 5' -60 NC_003521.1 + 98188 0.66 0.841414
Target:  5'- cGAAUCGgGGUggggaggacggcacAGUGUUUGGAgGGAGAGa -3'
miRNA:   3'- -UUUGGCgCCG--------------UCGCGAGCCU-CCUCUC- -5'
14318 5' -60 NC_003521.1 + 43640 0.66 0.839078
Target:  5'- gAGGCgGCGGCcGcCGCcggagagcagagaGGAGGAGAGg -3'
miRNA:   3'- -UUUGgCGCCGuC-GCGag-----------CCUCCUCUC- -5'
14318 5' -60 NC_003521.1 + 184362 0.66 0.835939
Target:  5'- cGGGCCGUGGCgcGGCGCcucUCGGAccuGGGccacGAGg -3'
miRNA:   3'- -UUUGGCGCCG--UCGCG---AGCCU---CCU----CUC- -5'
14318 5' -60 NC_003521.1 + 135260 0.66 0.835939
Target:  5'- -cACgGCGGCGGaCGCcgacgacgaGGAGGAcGAGg -3'
miRNA:   3'- uuUGgCGCCGUC-GCGag-------CCUCCU-CUC- -5'
14318 5' -60 NC_003521.1 + 215442 0.66 0.835939
Target:  5'- aGAGCCGCGGguGCugGCgccaGGccGAGGGa -3'
miRNA:   3'- -UUUGGCGCCguCG--CGag--CCucCUCUC- -5'
14318 5' -60 NC_003521.1 + 110535 0.66 0.835939
Target:  5'- -cGCCGCGGCcuCGCccaGGuagccGGAGAGg -3'
miRNA:   3'- uuUGGCGCCGucGCGag-CCu----CCUCUC- -5'
14318 5' -60 NC_003521.1 + 104683 0.66 0.835939
Target:  5'- cAggUgGUGGCGGCGCgccaCGGGGuAGAGc -3'
miRNA:   3'- -UuuGgCGCCGUCGCGa---GCCUCcUCUC- -5'
14318 5' -60 NC_003521.1 + 148250 0.66 0.835151
Target:  5'- gGAGCCGCcaaccgaGGguGgGCgauuccgggUUGGGGGAGGGg -3'
miRNA:   3'- -UUUGGCG-------CCguCgCG---------AGCCUCCUCUC- -5'
14318 5' -60 NC_003521.1 + 50909 0.66 0.827975
Target:  5'- uAAAUCGCGGUGGCGgaggUGGAGGAc-- -3'
miRNA:   3'- -UUUGGCGCCGUCGCga--GCCUCCUcuc -5'
14318 5' -60 NC_003521.1 + 127070 0.66 0.827975
Target:  5'- -uGCCGCGGCAGgGCcaccGAcGAGAGg -3'
miRNA:   3'- uuUGGCGCCGUCgCGagc-CUcCUCUC- -5'
14318 5' -60 NC_003521.1 + 78203 0.66 0.827975
Target:  5'- cGGAgCGgGcGCGGCGCUCGucGGAGGc -3'
miRNA:   3'- -UUUgGCgC-CGUCGCGAGCcuCCUCUc -5'
14318 5' -60 NC_003521.1 + 195851 0.66 0.827975
Target:  5'- ---gCGCGGCAGgGUUCGG-GGAu-- -3'
miRNA:   3'- uuugGCGCCGUCgCGAGCCuCCUcuc -5'
14318 5' -60 NC_003521.1 + 120284 0.66 0.827975
Target:  5'- -cACCGgGGUugagccaccGCGCUCGGGGGGu-- -3'
miRNA:   3'- uuUGGCgCCGu--------CGCGAGCCUCCUcuc -5'
14318 5' -60 NC_003521.1 + 111239 0.66 0.827975
Target:  5'- --gUCGCGGcCGGCGCggcgCGGcGGAGcAGc -3'
miRNA:   3'- uuuGGCGCC-GUCGCGa---GCCuCCUC-UC- -5'
14318 5' -60 NC_003521.1 + 164722 0.66 0.82717
Target:  5'- ---aCGCGGUgcggccuaccaccAGCGCg-GGAGGGGGGc -3'
miRNA:   3'- uuugGCGCCG-------------UCGCGagCCUCCUCUC- -5'
14318 5' -60 NC_003521.1 + 18464 0.66 0.824744
Target:  5'- cGACCGCgGGCuGCGCggcgagugucgccUGGAGGAGc- -3'
miRNA:   3'- uUUGGCG-CCGuCGCGa------------GCCUCCUCuc -5'
14318 5' -60 NC_003521.1 + 91877 0.66 0.819849
Target:  5'- cGGCgGCGGCGGUGCgaccaCGGAcGGAcGGa -3'
miRNA:   3'- uUUGgCGCCGUCGCGa----GCCU-CCUcUC- -5'
14318 5' -60 NC_003521.1 + 102949 0.66 0.819849
Target:  5'- --gUCGCGGUccaGGCGCUCGGGcgucGGGGc- -3'
miRNA:   3'- uuuGGCGCCG---UCGCGAGCCU----CCUCuc -5'
14318 5' -60 NC_003521.1 + 155430 0.66 0.814898
Target:  5'- -uGCUGcCGGCcaAGCGCagccgcuugugaggCGGAGGAGAa -3'
miRNA:   3'- uuUGGC-GCCG--UCGCGa-------------GCCUCCUCUc -5'
14318 5' -60 NC_003521.1 + 113806 0.66 0.811567
Target:  5'- -cACCGCGGCGGCGUcgUCGGGc----- -3'
miRNA:   3'- uuUGGCGCCGUCGCG--AGCCUccucuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.