miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14326 5' -55.5 NC_003521.1 + 191247 0.67 0.957785
Target:  5'- gGAgGCGGcGcCGCGGcCCACGCggcagGUGg -3'
miRNA:   3'- -CUgUGCCuCuGCGCUuGGUGCGa----CAC- -5'
14326 5' -55.5 NC_003521.1 + 204745 0.67 0.957785
Target:  5'- gGugAUGGAGGCGCcgccGCCGCccuGUUGUGu -3'
miRNA:   3'- -CugUGCCUCUGCGcu--UGGUG---CGACAC- -5'
14326 5' -55.5 NC_003521.1 + 182919 0.67 0.954068
Target:  5'- uGAgGCGGua--GCGGGCCACGUUGa- -3'
miRNA:   3'- -CUgUGCCucugCGCUUGGUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 48724 0.67 0.954068
Target:  5'- aGAgGUGGAGACGCcGGCgACGCUGc- -3'
miRNA:   3'- -CUgUGCCUCUGCGcUUGgUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 56367 0.67 0.954068
Target:  5'- ---uCGGAcGACGCuGGCCugGCUGUc -3'
miRNA:   3'- cuguGCCU-CUGCGcUUGGugCGACAc -5'
14326 5' -55.5 NC_003521.1 + 90073 0.67 0.954068
Target:  5'- cACGCGGgcGGGCGCGcACgCGCGCgGUa -3'
miRNA:   3'- cUGUGCC--UCUGCGCuUG-GUGCGaCAc -5'
14326 5' -55.5 NC_003521.1 + 117891 0.67 0.953684
Target:  5'- aGCACGGccGGGCGCGGaaaaagcucaagaACCACgGCgGUGc -3'
miRNA:   3'- cUGUGCC--UCUGCGCU-------------UGGUG-CGaCAC- -5'
14326 5' -55.5 NC_003521.1 + 13856 0.67 0.950135
Target:  5'- cGGCGCGGGGGucucUGCGGGCgGCGCc--- -3'
miRNA:   3'- -CUGUGCCUCU----GCGCUUGgUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 183414 0.67 0.950135
Target:  5'- cGAgACGGuGG-GCGAccgcACgGCGCUGUGg -3'
miRNA:   3'- -CUgUGCCuCUgCGCU----UGgUGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 112796 0.67 0.950135
Target:  5'- -cCGCGuGcGGCGCGAgguGCCGCGCacgGUGa -3'
miRNA:   3'- cuGUGC-CuCUGCGCU---UGGUGCGa--CAC- -5'
14326 5' -55.5 NC_003521.1 + 62395 0.67 0.950135
Target:  5'- -cCACGGAGACGCaGGACCucgGCgGCUaccaGUGu -3'
miRNA:   3'- cuGUGCCUCUGCG-CUUGG---UG-CGA----CAC- -5'
14326 5' -55.5 NC_003521.1 + 104826 0.67 0.950135
Target:  5'- aACACGGGcguGACGCGGccccccgaCACGCUGg- -3'
miRNA:   3'- cUGUGCCU---CUGCGCUug------GUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 150032 0.67 0.950135
Target:  5'- uGCACGu--GCGCGAcGCCACGCUGc- -3'
miRNA:   3'- cUGUGCcucUGCGCU-UGGUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 23835 0.67 0.950135
Target:  5'- cGugGCGG-GAgGCcGACCugcugGCGCUGUGu -3'
miRNA:   3'- -CugUGCCuCUgCGcUUGG-----UGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 117357 0.67 0.949323
Target:  5'- gGACACGGAgcuGACGCccagccuGAcggugcaggugcgGCaCGCGCUGUGc -3'
miRNA:   3'- -CUGUGCCU---CUGCG-------CU-------------UG-GUGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 197354 0.67 0.945985
Target:  5'- aGCACGGccgccGCGCuGGCC-CGCUGUGa -3'
miRNA:   3'- cUGUGCCuc---UGCGcUUGGuGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 212073 0.67 0.945985
Target:  5'- --gGCGGuGGCGCGGcCCGCGCg--- -3'
miRNA:   3'- cugUGCCuCUGCGCUuGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 151576 0.67 0.945985
Target:  5'- gGACGCGGc-GCGCGuuagcggucuCCGCGCUGg- -3'
miRNA:   3'- -CUGUGCCucUGCGCuu--------GGUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 125335 0.67 0.945985
Target:  5'- -cCACaGAGcgacACGCGGcCCACGCUGUu -3'
miRNA:   3'- cuGUGcCUC----UGCGCUuGGUGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 177181 0.67 0.943389
Target:  5'- gGGCACGGGGuuGCGCGugcgguacuucuccaGGCgGCGCUGc- -3'
miRNA:   3'- -CUGUGCCUC--UGCGC---------------UUGgUGCGACac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.