Results 41 - 60 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14328 | 5' | -55.5 | NC_003521.1 | + | 57354 | 0.74 | 0.680794 |
Target: 5'- cUGAagcugCCCAGACCGccgccGUGACGCGCc -3' miRNA: 3'- -ACUggcaaGGGUCUGGC-----UACUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 43880 | 0.74 | 0.651357 |
Target: 5'- gGGCCGUcgCCCAcGcuaccggugcuGCCGGUGACGaCGCg -3' miRNA: 3'- aCUGGCAa-GGGU-C-----------UGGCUACUGC-GCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 138090 | 0.75 | 0.621791 |
Target: 5'- cUGGCCc-UCCCAGGCCGAggucuGCGUGCu -3' miRNA: 3'- -ACUGGcaAGGGUCUGGCUac---UGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 240503 | 0.76 | 0.550465 |
Target: 5'- uUGGCCGUUUgcacgcuggggacgCCAGACCGGUGgACGCa- -3' miRNA: 3'- -ACUGGCAAG--------------GGUCUGGCUAC-UGCGcg -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 17511 | 0.78 | 0.460179 |
Target: 5'- cGGCgGUUCCCGGcCCGgcGGCGCGg -3' miRNA: 3'- aCUGgCAAGGGUCuGGCuaCUGCGCg -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 30454 | 0.71 | 0.801676 |
Target: 5'- cGGCCGa----GGguGCCGAUGACGCGCa -3' miRNA: 3'- aCUGGCaagggUC--UGGCUACUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 127458 | 0.71 | 0.801676 |
Target: 5'- cUGGCCGUUguugacgccCgCCAGcGCCGA-GAUGCGCg -3' miRNA: 3'- -ACUGGCAA---------G-GGUC-UGGCUaCUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 61904 | 0.69 | 0.89895 |
Target: 5'- -cGCCGUUCCCcgacguGAUgGGUGAC-CGCu -3' miRNA: 3'- acUGGCAAGGGu-----CUGgCUACUGcGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 148828 | 0.69 | 0.89895 |
Target: 5'- cGACCGccugCCCucGGCCGAgguGCGUGCc -3' miRNA: 3'- aCUGGCaa--GGGu-CUGGCUac-UGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 191212 | 0.69 | 0.897705 |
Target: 5'- -cGCCGUguccuccgcgucCCCAGcGCCGGUGACGCc- -3' miRNA: 3'- acUGGCAa-----------GGGUC-UGGCUACUGCGcg -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 180544 | 0.69 | 0.892636 |
Target: 5'- -cACCGUcUCCgCGGcguACCGggGugGCGCg -3' miRNA: 3'- acUGGCA-AGG-GUC---UGGCuaCugCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 228779 | 0.7 | 0.879376 |
Target: 5'- aUGACC--UCCaggugcaaCAGGCCG-UGACGUGCg -3' miRNA: 3'- -ACUGGcaAGG--------GUCUGGCuACUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 89972 | 0.7 | 0.872437 |
Target: 5'- cGGCCGUUCgggguucaaCCGG-CgGGUGGCGCuGCg -3' miRNA: 3'- aCUGGCAAG---------GGUCuGgCUACUGCG-CG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 56441 | 0.7 | 0.857965 |
Target: 5'- aGGCCGccucguggCCCAGGuCCGA-GAgGCGCc -3' miRNA: 3'- aCUGGCaa------GGGUCU-GGCUaCUgCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 187206 | 0.7 | 0.842736 |
Target: 5'- aUGACCGUgcaCgGGACCG-UGACuCGCu -3' miRNA: 3'- -ACUGGCAag-GgUCUGGCuACUGcGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 106528 | 0.7 | 0.842736 |
Target: 5'- aUGGCgGUUCCCAGAagCGcUGAaaGCGCg -3' miRNA: 3'- -ACUGgCAAGGGUCUg-GCuACUg-CGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 28714 | 0.7 | 0.842736 |
Target: 5'- cGACCGUgCgCCAGaugguggcgcacGCCGAcaaccaGACGCGCg -3' miRNA: 3'- aCUGGCAaG-GGUC------------UGGCUa-----CUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 76951 | 0.71 | 0.826797 |
Target: 5'- gGugCGUUCCagcaugucgcGGCCGAUG-CGCGUg -3' miRNA: 3'- aCugGCAAGGgu--------CUGGCUACuGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 135755 | 0.71 | 0.821885 |
Target: 5'- gGA-CGUUCCCgGGACCGAaggcgguggcggcagUGGCGCuGCg -3' miRNA: 3'- aCUgGCAAGGG-UCUGGCU---------------ACUGCG-CG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 34521 | 0.71 | 0.801676 |
Target: 5'- cGGCCG----CGGGCCGA-GACGCGCg -3' miRNA: 3'- aCUGGCaaggGUCUGGCUaCUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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