miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1433 3' -57.2 NC_001335.1 + 50761 0.66 0.603889
Target:  5'- --cGGggGCGGCgCACCUuGGGCGCg-- -3'
miRNA:   3'- ccuCCuuCGCUG-GUGGG-CUUGCGgua -5'
1433 3' -57.2 NC_001335.1 + 26444 0.66 0.603889
Target:  5'- cGGAGGAGGCG-CgACCgGGuACGgCGa -3'
miRNA:   3'- -CCUCCUUCGCuGgUGGgCU-UGCgGUa -5'
1433 3' -57.2 NC_001335.1 + 39408 0.66 0.560624
Target:  5'- cGAGGAauggugaagugAGCGGCCAaguUCUGGugGCCu- -3'
miRNA:   3'- cCUCCU-----------UCGCUGGU---GGGCUugCGGua -5'
1433 3' -57.2 NC_001335.1 + 36198 0.66 0.560624
Target:  5'- cGGAGGAGGUcACucgaCACCuCGAcCGCCGa -3'
miRNA:   3'- -CCUCCUUCGcUG----GUGG-GCUuGCGGUa -5'
1433 3' -57.2 NC_001335.1 + 17726 0.67 0.554199
Target:  5'- -cAGGAAGCccuucacugcaccaGCCACgCUGGACGCCAg -3'
miRNA:   3'- ccUCCUUCGc-------------UGGUG-GGCUUGCGGUa -5'
1433 3' -57.2 NC_001335.1 + 28196 0.67 0.518255
Target:  5'- uGGAGGGcaacgagaucGGCGuCUACaccgCCGAACGCCc- -3'
miRNA:   3'- -CCUCCU----------UCGCuGGUG----GGCUUGCGGua -5'
1433 3' -57.2 NC_001335.1 + 27378 0.68 0.497546
Target:  5'- cGAGGcccGUGACCGCgCCGAG-GCCAa -3'
miRNA:   3'- cCUCCuu-CGCUGGUG-GGCUUgCGGUa -5'
1433 3' -57.2 NC_001335.1 + 13924 0.68 0.497546
Target:  5'- cGGAGGAucGgGGCCgcuacuGCCUGGACGCgAg -3'
miRNA:   3'- -CCUCCUu-CgCUGG------UGGGCUUGCGgUa -5'
1433 3' -57.2 NC_001335.1 + 20633 0.68 0.476211
Target:  5'- aGGcGGGAGGUcaaucgcuccaccGACCGCgCCGAGCGCgGc -3'
miRNA:   3'- -CC-UCCUUCG-------------CUGGUG-GGCUUGCGgUa -5'
1433 3' -57.2 NC_001335.1 + 16374 0.68 0.466212
Target:  5'- cGGGGcagcgucGAGGCGGCUGCCUuGAUGCCGUc -3'
miRNA:   3'- -CCUC-------CUUCGCUGGUGGGcUUGCGGUA- -5'
1433 3' -57.2 NC_001335.1 + 1429 0.68 0.457307
Target:  5'- cGGAGGAgacuGGCaGGCUuuggACCCGGaucaccacgACGCCAUc -3'
miRNA:   3'- -CCUCCU----UCG-CUGG----UGGGCU---------UGCGGUA- -5'
1433 3' -57.2 NC_001335.1 + 21286 0.68 0.457307
Target:  5'- --cGGAugcGUGAUCGCCCcGACGCCAg -3'
miRNA:   3'- ccuCCUu--CGCUGGUGGGcUUGCGGUa -5'
1433 3' -57.2 NC_001335.1 + 10902 0.7 0.381592
Target:  5'- aGGAGGcuGCaGCCGCUCGGguggcgaagaaggACGCCGUa -3'
miRNA:   3'- -CCUCCuuCGcUGGUGGGCU-------------UGCGGUA- -5'
1433 3' -57.2 NC_001335.1 + 26123 0.71 0.301102
Target:  5'- cGGAGGGaucgcAGCGAUCACCaucgCGAugAUGCCGUg -3'
miRNA:   3'- -CCUCCU-----UCGCUGGUGG----GCU--UGCGGUA- -5'
1433 3' -57.2 NC_001335.1 + 33801 0.73 0.252519
Target:  5'- --cGGAAGUGGCCgACCCGAAgaGCCGg -3'
miRNA:   3'- ccuCCUUCGCUGG-UGGGCUUg-CGGUa -5'
1433 3' -57.2 NC_001335.1 + 2585 1.07 0.000792
Target:  5'- cGGAGGAAGCGACCACCCGAACGCCAUc -3'
miRNA:   3'- -CCUCCUUCGCUGGUGGGCUUGCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.