miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1433 5' -59.3 NC_001335.1 + 26169 0.66 0.499785
Target:  5'- -------gGGGCCuGGaGCCCGCUgCCg -3'
miRNA:   3'- gcuauucgCCCGGuCCaCGGGCGA-GG- -5'
1433 5' -59.3 NC_001335.1 + 10602 0.66 0.498773
Target:  5'- gCGAcgAAGCuGacgaccucauugcGUCAGGcaagGCCCGCUCCa -3'
miRNA:   3'- -GCUa-UUCGcC-------------CGGUCCa---CGGGCGAGG- -5'
1433 5' -59.3 NC_001335.1 + 13436 0.66 0.489711
Target:  5'- uCGAUcuGGGacuGGGCCccgAGGaUGCCgUGCUCCu -3'
miRNA:   3'- -GCUA--UUCg--CCCGG---UCC-ACGG-GCGAGG- -5'
1433 5' -59.3 NC_001335.1 + 35858 0.67 0.450419
Target:  5'- -----cGCGGGCCu--UGgCCGCUCCc -3'
miRNA:   3'- gcuauuCGCCCGGuccACgGGCGAGG- -5'
1433 5' -59.3 NC_001335.1 + 15082 0.67 0.403853
Target:  5'- ---gAAGCuGGGCCAGaagGCCCGCg-- -3'
miRNA:   3'- gcuaUUCG-CCCGGUCca-CGGGCGagg -5'
1433 5' -59.3 NC_001335.1 + 51658 0.68 0.389608
Target:  5'- gCGGUAGGCGGauccgagaggaucguGCC-GGUGCCgGUgaaaaUCCg -3'
miRNA:   3'- -GCUAUUCGCC---------------CGGuCCACGGgCG-----AGG- -5'
1433 5' -59.3 NC_001335.1 + 7782 0.68 0.368865
Target:  5'- gGAUAAGCacGGCaGGGaGUUCGCUCCg -3'
miRNA:   3'- gCUAUUCGc-CCGgUCCaCGGGCGAGG- -5'
1433 5' -59.3 NC_001335.1 + 34415 0.68 0.360449
Target:  5'- uCGGUgGAGU-GGCCAGcG-GCCCGCUgCCg -3'
miRNA:   3'- -GCUA-UUCGcCCGGUC-CaCGGGCGA-GG- -5'
1433 5' -59.3 NC_001335.1 + 2701 0.69 0.344022
Target:  5'- gGGUgGAGCGGGCaccugGCCCGCUUa -3'
miRNA:   3'- gCUA-UUCGCCCGguccaCGGGCGAGg -5'
1433 5' -59.3 NC_001335.1 + 24092 0.69 0.320404
Target:  5'- gCGGc-GGCGGGgCuGGUGCCCagguCUCCg -3'
miRNA:   3'- -GCUauUCGCCCgGuCCACGGGc---GAGG- -5'
1433 5' -59.3 NC_001335.1 + 17896 0.71 0.238194
Target:  5'- gCGAgaaucccgGAG-GGGUC-GGUGCCCGaCUCCa -3'
miRNA:   3'- -GCUa-------UUCgCCCGGuCCACGGGC-GAGG- -5'
1433 5' -59.3 NC_001335.1 + 5948 0.72 0.209507
Target:  5'- ---cGAGCGGGUCGGGcugGCCUGUgCCg -3'
miRNA:   3'- gcuaUUCGCCCGGUCCa--CGGGCGaGG- -5'
1433 5' -59.3 NC_001335.1 + 6098 0.73 0.183849
Target:  5'- uCGu--GGUGGGCCAGGUGCUCaaGCaCCa -3'
miRNA:   3'- -GCuauUCGCCCGGUCCACGGG--CGaGG- -5'
1433 5' -59.3 NC_001335.1 + 2620 1.12 0.000246
Target:  5'- uCGAUAAGCGGGCCAGGUGCCCGCUCCa -3'
miRNA:   3'- -GCUAUUCGCCCGGUCCACGGGCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.