miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14337 3' -57.7 NC_003521.1 + 74634 0.66 0.941548
Target:  5'- aGCGGGgUgGUG-CGCGgGACC-CUGGa -3'
miRNA:   3'- -CGCCCgAgUACaGCGCaCUGGaGGCU- -5'
14337 3' -57.7 NC_003521.1 + 39221 0.66 0.941548
Target:  5'- cGCGGGCUCggGgacaGCGgUGGCC-CgCGGc -3'
miRNA:   3'- -CGCCCGAGuaCag--CGC-ACUGGaG-GCU- -5'
14337 3' -57.7 NC_003521.1 + 57322 0.66 0.941548
Target:  5'- -aGGGCcCGUGgCGCaUGACCaUCUGAa -3'
miRNA:   3'- cgCCCGaGUACaGCGcACUGG-AGGCU- -5'
14337 3' -57.7 NC_003521.1 + 239449 0.66 0.941548
Target:  5'- cGCGGGCUCggGgacaGCGgUGGCC-CgCGGc -3'
miRNA:   3'- -CGCCCGAGuaCag--CGC-ACUGGaG-GCU- -5'
14337 3' -57.7 NC_003521.1 + 87155 0.66 0.939774
Target:  5'- aGCGGGCgcaguUCGUG-CGCGcGGCCgugcagcgcuccaCCGAg -3'
miRNA:   3'- -CGCCCG-----AGUACaGCGCaCUGGa------------GGCU- -5'
14337 3' -57.7 NC_003521.1 + 28483 0.66 0.937049
Target:  5'- aGCGGGUggUgAUGg-GCGUGACCgUCGGg -3'
miRNA:   3'- -CGCCCG--AgUACagCGCACUGGaGGCU- -5'
14337 3' -57.7 NC_003521.1 + 87353 0.66 0.937049
Target:  5'- -aGGGCauccgCGUGUa-CGUGGCCUgCGAg -3'
miRNA:   3'- cgCCCGa----GUACAgcGCACUGGAgGCU- -5'
14337 3' -57.7 NC_003521.1 + 62336 0.66 0.937049
Target:  5'- cUGGGCUCAcgUGUUucgggacuacaGCGUGGCCUUucaGAc -3'
miRNA:   3'- cGCCCGAGU--ACAG-----------CGCACUGGAGg--CU- -5'
14337 3' -57.7 NC_003521.1 + 214022 0.66 0.937049
Target:  5'- aCGGcGCUCAggGUgGCGUuaGACCgguggCCGGa -3'
miRNA:   3'- cGCC-CGAGUa-CAgCGCA--CUGGa----GGCU- -5'
14337 3' -57.7 NC_003521.1 + 169544 0.66 0.937049
Target:  5'- -gGGGCcCGUGcCGCGgcccccGCCUCCGc -3'
miRNA:   3'- cgCCCGaGUACaGCGCac----UGGAGGCu -5'
14337 3' -57.7 NC_003521.1 + 85829 0.66 0.927403
Target:  5'- cGCGGGUgcUCAUGaUCuCGUagagggccauGACCUCUGGa -3'
miRNA:   3'- -CGCCCG--AGUAC-AGcGCA----------CUGGAGGCU- -5'
14337 3' -57.7 NC_003521.1 + 195912 0.66 0.922256
Target:  5'- -aGGGCUCAcgcUGcUCGCG-GGCaCUCgGAc -3'
miRNA:   3'- cgCCCGAGU---AC-AGCGCaCUG-GAGgCU- -5'
14337 3' -57.7 NC_003521.1 + 150284 0.66 0.922256
Target:  5'- cGUGGGUgc-UGUCGCGgGGCCaUCgCGAg -3'
miRNA:   3'- -CGCCCGaguACAGCGCaCUGG-AG-GCU- -5'
14337 3' -57.7 NC_003521.1 + 37459 0.66 0.916893
Target:  5'- uGUGGGCUCGcG-CGCG-GGCCaCCGu -3'
miRNA:   3'- -CGCCCGAGUaCaGCGCaCUGGaGGCu -5'
14337 3' -57.7 NC_003521.1 + 5894 0.66 0.916345
Target:  5'- aGCGGGgagagaaggUUCGggagGUcCGCGUGACCUgacggacCCGAg -3'
miRNA:   3'- -CGCCC---------GAGUa---CA-GCGCACUGGA-------GGCU- -5'
14337 3' -57.7 NC_003521.1 + 133222 0.66 0.915794
Target:  5'- cGCGGGUUCAggggcgauggcgGUCGaGgacGACCUCCu- -3'
miRNA:   3'- -CGCCCGAGUa-----------CAGCgCa--CUGGAGGcu -5'
14337 3' -57.7 NC_003521.1 + 178002 0.66 0.914687
Target:  5'- aGCGGGC-CAUGcccaugaugauacCGCG-GAUCUCCGc -3'
miRNA:   3'- -CGCCCGaGUACa------------GCGCaCUGGAGGCu -5'
14337 3' -57.7 NC_003521.1 + 32371 0.67 0.905521
Target:  5'- -gGGGCUUuUGguggCGCGUGGCCaggUCCu- -3'
miRNA:   3'- cgCCCGAGuACa---GCGCACUGG---AGGcu -5'
14337 3' -57.7 NC_003521.1 + 100914 0.67 0.905521
Target:  5'- gGUGGGCUCcgcUCGCGUcggGAUUUCCGc -3'
miRNA:   3'- -CGCCCGAGuacAGCGCA---CUGGAGGCu -5'
14337 3' -57.7 NC_003521.1 + 240458 0.67 0.899517
Target:  5'- gGCGGGCagcgGUCGCaGgcgccGCCUCCGGc -3'
miRNA:   3'- -CGCCCGaguaCAGCG-Cac---UGGAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.