miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14337 3' -57.7 NC_003521.1 + 30717 1.1 0.002991
Target:  5'- cGCGGGCUCAUGUCGCGUGACCUCCGAc -3'
miRNA:   3'- -CGCCCGAGUACAGCGCACUGGAGGCU- -5'
14337 3' -57.7 NC_003521.1 + 234193 0.76 0.448922
Target:  5'- aGCGGGCcaagCGUucgCGCGcGGCCUCCGAa -3'
miRNA:   3'- -CGCCCGa---GUAca-GCGCaCUGGAGGCU- -5'
14337 3' -57.7 NC_003521.1 + 115490 0.71 0.732358
Target:  5'- cGUGGGCcgCGUGUCGCucuGUGGCCggacCCa- -3'
miRNA:   3'- -CGCCCGa-GUACAGCG---CACUGGa---GGcu -5'
14337 3' -57.7 NC_003521.1 + 16632 0.7 0.768988
Target:  5'- cGCuGGCUC-UGUCGCGgcGACCgcuuucgggCCGAg -3'
miRNA:   3'- -CGcCCGAGuACAGCGCa-CUGGa--------GGCU- -5'
14337 3' -57.7 NC_003521.1 + 88742 0.7 0.768988
Target:  5'- aGCcGGCgCAcGUCGcCGUGGuCCUCCGAg -3'
miRNA:   3'- -CGcCCGaGUaCAGC-GCACU-GGAGGCU- -5'
14337 3' -57.7 NC_003521.1 + 184360 0.7 0.77789
Target:  5'- gGCGGGC-CGUGgCGCGgcGCCUCuCGGa -3'
miRNA:   3'- -CGCCCGaGUACaGCGCacUGGAG-GCU- -5'
14337 3' -57.7 NC_003521.1 + 156846 0.7 0.786673
Target:  5'- aCGuGGC-CAUGUCGCGggucaccGACC-CCGAg -3'
miRNA:   3'- cGC-CCGaGUACAGCGCa------CUGGaGGCU- -5'
14337 3' -57.7 NC_003521.1 + 146733 0.7 0.786673
Target:  5'- -gGGGUUguUG-CGCGUcGCCUCCGGg -3'
miRNA:   3'- cgCCCGAguACaGCGCAcUGGAGGCU- -5'
14337 3' -57.7 NC_003521.1 + 155096 0.69 0.795331
Target:  5'- -aGGuGCUCAUGaacuacugCGaCGUGGCCUCCa- -3'
miRNA:   3'- cgCC-CGAGUACa-------GC-GCACUGGAGGcu -5'
14337 3' -57.7 NC_003521.1 + 160331 0.69 0.803855
Target:  5'- cGUGGGCg---G-CGCgGUGGCCUCCGu -3'
miRNA:   3'- -CGCCCGaguaCaGCG-CACUGGAGGCu -5'
14337 3' -57.7 NC_003521.1 + 69912 0.69 0.803855
Target:  5'- gGUGGGCUCuaccUGUCGCGccuGCUUCgCGAc -3'
miRNA:   3'- -CGCCCGAGu---ACAGCGCac-UGGAG-GCU- -5'
14337 3' -57.7 NC_003521.1 + 126280 0.69 0.812239
Target:  5'- cGUGGuGCUgAUGUCGCGcu-CCUCCu- -3'
miRNA:   3'- -CGCC-CGAgUACAGCGCacuGGAGGcu -5'
14337 3' -57.7 NC_003521.1 + 136790 0.68 0.836475
Target:  5'- aGCGGGCUCAcgGUCaCGcUGcCCgCCGAc -3'
miRNA:   3'- -CGCCCGAGUa-CAGcGC-ACuGGaGGCU- -5'
14337 3' -57.7 NC_003521.1 + 115400 0.68 0.859199
Target:  5'- cGCGGGCg---GcCGCcacGGCCUCCGGa -3'
miRNA:   3'- -CGCCCGaguaCaGCGca-CUGGAGGCU- -5'
14337 3' -57.7 NC_003521.1 + 19966 0.67 0.886881
Target:  5'- cCGGGCUgGcgGUgauCGUGACCUCCGu -3'
miRNA:   3'- cGCCCGAgUa-CAgc-GCACUGGAGGCu -5'
14337 3' -57.7 NC_003521.1 + 206728 0.67 0.886881
Target:  5'- gGCGGGCUCcuaUCGCGcGAUaucgCCGAc -3'
miRNA:   3'- -CGCCCGAGuacAGCGCaCUGga--GGCU- -5'
14337 3' -57.7 NC_003521.1 + 176625 0.67 0.889474
Target:  5'- uGCGuGGCcagCAgguacugcuacgcaGUCGCGUGAUCUCCu- -3'
miRNA:   3'- -CGC-CCGa--GUa-------------CAGCGCACUGGAGGcu -5'
14337 3' -57.7 NC_003521.1 + 166286 0.67 0.893302
Target:  5'- gGCGcGGCUg--GUcCGCGUGGCCUCg-- -3'
miRNA:   3'- -CGC-CCGAguaCA-GCGCACUGGAGgcu -5'
14337 3' -57.7 NC_003521.1 + 91688 0.67 0.893933
Target:  5'- aGCGGGCUCcugggcgugcugcgGUCuGCGUGccgcuCCuUCCGAc -3'
miRNA:   3'- -CGCCCGAGua------------CAG-CGCACu----GG-AGGCU- -5'
14337 3' -57.7 NC_003521.1 + 240458 0.67 0.899517
Target:  5'- gGCGGGCagcgGUCGCaGgcgccGCCUCCGGc -3'
miRNA:   3'- -CGCCCGaguaCAGCG-Cac---UGGAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.