miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14337 5' -49.5 NC_003521.1 + 143386 0.66 0.999887
Target:  5'- cGGUCGAAAGCGaCGgAgGagacGGAGGgGa -3'
miRNA:   3'- -CCAGCUUUUGCaGCgUgUa---UCUCCgC- -5'
14337 5' -49.5 NC_003521.1 + 153689 0.66 0.999887
Target:  5'- aGGUCGcaugaAGAGCaGUCGCGac--GAGGUGg -3'
miRNA:   3'- -CCAGC-----UUUUG-CAGCGUguauCUCCGC- -5'
14337 5' -49.5 NC_003521.1 + 45043 0.66 0.999887
Target:  5'- gGGUCGAGAgccGCGcCGCuCGUGccAGGCa -3'
miRNA:   3'- -CCAGCUUU---UGCaGCGuGUAUc-UCCGc -5'
14337 5' -49.5 NC_003521.1 + 108879 0.66 0.999887
Target:  5'- aGUCGAugcacACGUCGCGCAUAuucuuGAuGCa -3'
miRNA:   3'- cCAGCUuu---UGCAGCGUGUAU-----CUcCGc -5'
14337 5' -49.5 NC_003521.1 + 33293 0.66 0.999887
Target:  5'- --gCGAGAGC-UCGUACAUGccGGCGa -3'
miRNA:   3'- ccaGCUUUUGcAGCGUGUAUcuCCGC- -5'
14337 5' -49.5 NC_003521.1 + 76247 0.66 0.999887
Target:  5'- -cUCGAGcgUGagGCGCG-AGAGGCGc -3'
miRNA:   3'- ccAGCUUuuGCagCGUGUaUCUCCGC- -5'
14337 5' -49.5 NC_003521.1 + 212663 0.66 0.999887
Target:  5'- ---aGAGGGCGUCGCggGCAUGGucGCc -3'
miRNA:   3'- ccagCUUUUGCAGCG--UGUAUCucCGc -5'
14337 5' -49.5 NC_003521.1 + 110382 0.66 0.999887
Target:  5'- cGUCGAu--CGUCGCcCGUAGu-GCGa -3'
miRNA:   3'- cCAGCUuuuGCAGCGuGUAUCucCGC- -5'
14337 5' -49.5 NC_003521.1 + 91493 0.66 0.999887
Target:  5'- gGGUgGggGAUGg-GCACcaacaacaggcaAUGGAGGUGg -3'
miRNA:   3'- -CCAgCuuUUGCagCGUG------------UAUCUCCGC- -5'
14337 5' -49.5 NC_003521.1 + 128799 0.66 0.999887
Target:  5'- cGGUCGGggcaccgcaGAACGUUuucccggugggGCuCGUAGAcGGCGa -3'
miRNA:   3'- -CCAGCU---------UUUGCAG-----------CGuGUAUCU-CCGC- -5'
14337 5' -49.5 NC_003521.1 + 147654 0.66 0.999887
Target:  5'- cGUCGAGccccgguagaggGACGUCGagcgACGgccGGAGGUGg -3'
miRNA:   3'- cCAGCUU------------UUGCAGCg---UGUa--UCUCCGC- -5'
14337 5' -49.5 NC_003521.1 + 130752 0.66 0.999884
Target:  5'- uGUCGGcgggcgcGAGCGcCGCGCcgGGGGaGCa -3'
miRNA:   3'- cCAGCU-------UUUGCaGCGUGuaUCUC-CGc -5'
14337 5' -49.5 NC_003521.1 + 99249 0.66 0.999881
Target:  5'- cGGUgCGcgcguCGUCGCGCGcgagguccagacAGAGGCGg -3'
miRNA:   3'- -CCA-GCuuuu-GCAGCGUGUa-----------UCUCCGC- -5'
14337 5' -49.5 NC_003521.1 + 32819 0.66 0.999878
Target:  5'- cGGUcCGAAaagacguacucgcuGACGUCGCaaaccgGCAgggucUGGAGGCc -3'
miRNA:   3'- -CCA-GCUU--------------UUGCAGCG------UGU-----AUCUCCGc -5'
14337 5' -49.5 NC_003521.1 + 86252 0.66 0.999855
Target:  5'- cGGUUGAGAA--UCGCGCu--GAGGUu -3'
miRNA:   3'- -CCAGCUUUUgcAGCGUGuauCUCCGc -5'
14337 5' -49.5 NC_003521.1 + 139166 0.66 0.999855
Target:  5'- aGGUgGAGGAgccggUGUCGCGCAUGuuGGUc -3'
miRNA:   3'- -CCAgCUUUU-----GCAGCGUGUAUcuCCGc -5'
14337 5' -49.5 NC_003521.1 + 49077 0.66 0.999855
Target:  5'- cGGUgGAc--CGUCGgACG-GGGGGCGa -3'
miRNA:   3'- -CCAgCUuuuGCAGCgUGUaUCUCCGC- -5'
14337 5' -49.5 NC_003521.1 + 227777 0.66 0.999815
Target:  5'- -aUCGAcAGCGUCGUAUgaGGGucGGCGg -3'
miRNA:   3'- ccAGCUuUUGCAGCGUGuaUCU--CCGC- -5'
14337 5' -49.5 NC_003521.1 + 77383 0.66 0.999815
Target:  5'- gGGcUCGAAGACgGUgGCACccUGGuAGGCa -3'
miRNA:   3'- -CC-AGCUUUUG-CAgCGUGu-AUC-UCCGc -5'
14337 5' -49.5 NC_003521.1 + 170176 0.66 0.999815
Target:  5'- uGGUCGAcuucgGAGCGguggUGCcgGUGGAGGUa -3'
miRNA:   3'- -CCAGCU-----UUUGCa---GCGugUAUCUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.