miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14337 5' -49.5 NC_003521.1 + 101668 0.66 0.999815
Target:  5'- -cUCGAugaaguuGGCGUCGgGCG-AGGGGCa -3'
miRNA:   3'- ccAGCUu------UUGCAGCgUGUaUCUCCGc -5'
14337 5' -49.5 NC_003521.1 + 141062 0.66 0.999705
Target:  5'- -cUCGAccaccacAACGUCuGCgACGUGGAGGCc -3'
miRNA:   3'- ccAGCUu------UUGCAG-CG-UGUAUCUCCGc -5'
14337 5' -49.5 NC_003521.1 + 76247 0.66 0.999887
Target:  5'- -cUCGAGcgUGagGCGCG-AGAGGCGc -3'
miRNA:   3'- ccAGCUUuuGCagCGUGUaUCUCCGC- -5'
14337 5' -49.5 NC_003521.1 + 139166 0.66 0.999855
Target:  5'- aGGUgGAGGAgccggUGUCGCGCAUGuuGGUc -3'
miRNA:   3'- -CCAgCUUUU-----GCAGCGUGUAUcuCCGc -5'
14337 5' -49.5 NC_003521.1 + 130752 0.66 0.999884
Target:  5'- uGUCGGcgggcgcGAGCGcCGCGCcgGGGGaGCa -3'
miRNA:   3'- cCAGCU-------UUUGCaGCGUGuaUCUC-CGc -5'
14337 5' -49.5 NC_003521.1 + 56212 0.66 0.999705
Target:  5'- --aCGGGAGCGUCGUACuccccgaAGuGGCa -3'
miRNA:   3'- ccaGCUUUUGCAGCGUGua-----UCuCCGc -5'
14337 5' -49.5 NC_003521.1 + 118671 0.66 0.99976
Target:  5'- gGGUCGGcuucgggAGGCGgcgguacCGCugGUGGAGGgCa -3'
miRNA:   3'- -CCAGCU-------UUUGCa------GCGugUAUCUCC-Gc -5'
14337 5' -49.5 NC_003521.1 + 49077 0.66 0.999855
Target:  5'- cGGUgGAc--CGUCGgACG-GGGGGCGa -3'
miRNA:   3'- -CCAgCUuuuGCAGCgUGUaUCUCCGC- -5'
14337 5' -49.5 NC_003521.1 + 32819 0.66 0.999878
Target:  5'- cGGUcCGAAaagacguacucgcuGACGUCGCaaaccgGCAgggucUGGAGGCc -3'
miRNA:   3'- -CCA-GCUU--------------UUGCAGCG------UGU-----AUCUCCGc -5'
14337 5' -49.5 NC_003521.1 + 32296 0.66 0.999731
Target:  5'- cGGcCGAAugggccagacagcuGCGgCGCACGUAGAccauGGCGu -3'
miRNA:   3'- -CCaGCUUu-------------UGCaGCGUGUAUCU----CCGC- -5'
14337 5' -49.5 NC_003521.1 + 70285 0.66 0.999811
Target:  5'- aGGUCGGcgccgaagagaAAGCGgugcaggUCGCccaGCAgcGAGGCGg -3'
miRNA:   3'- -CCAGCU-----------UUUGC-------AGCG---UGUauCUCCGC- -5'
14337 5' -49.5 NC_003521.1 + 170176 0.66 0.999815
Target:  5'- uGGUCGAcuucgGAGCGguggUGCcgGUGGAGGUa -3'
miRNA:   3'- -CCAGCU-----UUUGCa---GCGugUAUCUCCGc -5'
14337 5' -49.5 NC_003521.1 + 77383 0.66 0.999815
Target:  5'- gGGcUCGAAGACgGUgGCACccUGGuAGGCa -3'
miRNA:   3'- -CC-AGCUUUUG-CAgCGUGu-AUC-UCCGc -5'
14337 5' -49.5 NC_003521.1 + 91493 0.66 0.999887
Target:  5'- gGGUgGggGAUGg-GCACcaacaacaggcaAUGGAGGUGg -3'
miRNA:   3'- -CCAgCuuUUGCagCGUG------------UAUCUCCGC- -5'
14337 5' -49.5 NC_003521.1 + 122320 0.66 0.999766
Target:  5'- cGUCGAAAACGaaGCACAcgacacgcGGAucGGCGu -3'
miRNA:   3'- cCAGCUUUUGCagCGUGUa-------UCU--CCGC- -5'
14337 5' -49.5 NC_003521.1 + 54702 0.66 0.999705
Target:  5'- uGUUGAAAucggGCG-CGCACAUGGAGa-- -3'
miRNA:   3'- cCAGCUUU----UGCaGCGUGUAUCUCcgc -5'
14337 5' -49.5 NC_003521.1 + 101792 0.66 0.999705
Target:  5'- aGGUCaguuGGGCG-CGCACGaagcccaGGGGGCGg -3'
miRNA:   3'- -CCAGcu--UUUGCaGCGUGUa------UCUCCGC- -5'
14337 5' -49.5 NC_003521.1 + 33293 0.66 0.999887
Target:  5'- --gCGAGAGC-UCGUACAUGccGGCGa -3'
miRNA:   3'- ccaGCUUUUGcAGCGUGUAUcuCCGC- -5'
14337 5' -49.5 NC_003521.1 + 110382 0.66 0.999887
Target:  5'- cGUCGAu--CGUCGCcCGUAGu-GCGa -3'
miRNA:   3'- cCAGCUuuuGCAGCGuGUAUCucCGC- -5'
14337 5' -49.5 NC_003521.1 + 57218 0.66 0.999815
Target:  5'- -cUCGGAGGCGUaGCuc--AGAGGCGa -3'
miRNA:   3'- ccAGCUUUUGCAgCGuguaUCUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.