Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 14338 | 3' | -54 | NC_003521.1 | + | 23966 | 0.72 | 0.786499 |
|
Target: 5'- -gCUCCACGGgccuggaacAGUCGUCCGCCGc--- -3' miRNA: 3'- gaGAGGUGCU---------UCGGCAGGUGGCauuu -5' |
|||||||
| 14338 | 3' | -54 | NC_003521.1 | + | 166579 | 0.72 | 0.786499 |
|
Target: 5'- -aCUCCAgGAAcccGUCGUCCACCGUc-- -3' miRNA: 3'- gaGAGGUgCUU---CGGCAGGUGGCAuuu -5' |
|||||||
| 14338 | 3' | -54 | NC_003521.1 | + | 582 | 0.73 | 0.739628 |
|
Target: 5'- aCUUUCCGCuGAAGCCGUUC-CCGUu-- -3' miRNA: 3'- -GAGAGGUG-CUUCGGCAGGuGGCAuuu -5' |
|||||||
| 14338 | 3' | -54 | NC_003521.1 | + | 200809 | 0.73 | 0.739628 |
|
Target: 5'- aCUUUCCGCuGAAGCCGUUC-CCGUu-- -3' miRNA: 3'- -GAGAGGUG-CUUCGGCAGGuGGCAuuu -5' |
|||||||
| 14338 | 3' | -54 | NC_003521.1 | + | 84972 | 0.75 | 0.680454 |
|
Target: 5'- aUCUCCACGAAGCgCGa-CACCGUGc- -3' miRNA: 3'- gAGAGGUGCUUCG-GCagGUGGCAUuu -5' |
|||||||
| 14338 | 3' | -54 | NC_003521.1 | + | 157085 | 0.75 | 0.629987 |
|
Target: 5'- uUCUCCugGugAGGUCGUCCuCCGUAGAc -3' miRNA: 3'- gAGAGGugC--UUCGGCAGGuGGCAUUU- -5' |
|||||||
| 14338 | 3' | -54 | NC_003521.1 | + | 165695 | 0.76 | 0.599661 |
|
Target: 5'- gUCggCCGcCGaAAGCCGUCCACCGUGc- -3' miRNA: 3'- gAGa-GGU-GC-UUCGGCAGGUGGCAUuu -5' |
|||||||
| 14338 | 3' | -54 | NC_003521.1 | + | 31221 | 1.07 | 0.009204 |
|
Target: 5'- aCUCUCCACGAAGCCGUCCACCGUAAAg -3' miRNA: 3'- -GAGAGGUGCUUCGGCAGGUGGCAUUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home